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2XH7
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (146 KB)
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(1)
Title
:
ENGINEERING THE ENOLASE ACTIVE SITE POCKET: CRYSTAL STRUCTURE OF THE D321A MUTANT OF YEAST ENOLASE 1
Authors
:
B. Schreier, B. Hocker
Date
:
09 Jun 10 (Deposition) - 25 Aug 10 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lyase, Tim-Barrel, Enolase Superfamily, Glycolysis, Gluconeogenesis, Metal Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Schreier, B. Hoecker
Engineering The Enolase Magnesium Ii Binding Site - Implications For Its Evolution.
Biochemistry V. 49 7582 2010
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 2-PHOSPHOGLYCERIC ACID (2PGa)
1b: 2-PHOSPHOGLYCERIC ACID (2PGb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PG
2
Ligand/Ion
2-PHOSPHOGLYCERIC ACID
2
MG
10
Ligand/Ion
MAGNESIUM ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:246 , GLU A:295 , ASP A:320 , LYS A:396 , 2PG A:1440 , HOH A:2268
BINDING SITE FOR RESIDUE MG A1439
02
AC2
SOFTWARE
GLY A:37 , ALA A:38 , SER A:39 , HIS A:159 , GLN A:167 , GLU A:168 , GLU A:211 , ASP A:246 , GLU A:295 , ASP A:320 , LEU A:343 , LYS A:345 , HIS A:373 , ARG A:374 , SER A:375 , LYS A:396 , MG A:1439 , MG A:1441 , HOH A:2327
BINDING SITE FOR RESIDUE 2PG A1440
03
AC3
SOFTWARE
SER A:39 , 2PG A:1440 , HOH A:2059 , HOH A:2327
BINDING SITE FOR RESIDUE MG A1441
04
AC4
SOFTWARE
ASP A:135 , HOH A:2182 , HOH A:2184 , HOH A:2200 , HOH B:2228 , HOH B:2229
BINDING SITE FOR RESIDUE MG A1442
05
AC5
SOFTWARE
ASP A:280 , HOH A:2005 , HOH A:2147 , HOH A:2275 , HOH A:2280 , HOH A:2281
BINDING SITE FOR RESIDUE MG A1443
06
AC6
SOFTWARE
GLU A:354 , HOH A:2164 , HOH A:2332 , HOH A:2333 , HOH A:2334 , HOH A:2335
BINDING SITE FOR RESIDUE MG A1444
07
AC7
SOFTWARE
ASP B:246 , GLU B:295 , ASP B:320 , LYS B:396 , 2PG B:1440 , HOH B:2272
BINDING SITE FOR RESIDUE MG B1439
08
AC8
SOFTWARE
GLY B:37 , ALA B:38 , SER B:39 , HIS B:159 , GLN B:167 , GLU B:168 , GLU B:211 , ASP B:246 , GLU B:295 , ASP B:320 , LEU B:343 , LYS B:345 , HIS B:373 , ARG B:374 , SER B:375 , LYS B:396 , MG B:1439 , MG B:1441 , HOH B:2303
BINDING SITE FOR RESIDUE 2PG B1440
09
AC9
SOFTWARE
SER B:39 , LYS B:345 , 2PG B:1440 , HOH B:2046 , HOH B:2303
BINDING SITE FOR RESIDUE MG B1441
10
BC1
SOFTWARE
HOH A:2254 , HOH A:2255 , ASP B:135 , HOH B:2162 , HOH B:2169 , HOH B:2170
BINDING SITE FOR RESIDUE MG B1442
11
BC2
SOFTWARE
GLU B:354 , HOH B:2159 , HOH B:2311 , HOH B:2312 , HOH B:2313 , HOH B:2314
BINDING SITE FOR RESIDUE MG B1443
12
BC3
SOFTWARE
ASP B:280 , HOH B:2006 , HOH B:2126 , HOH B:2252 , HOH B:2256 , HOH B:2259
BINDING SITE FOR RESIDUE MG B1444
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ENOLASE (A:342-355,B:342-355)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOLASE
PS00164
Enolase signature.
ENO1_YEAST
343-356
2
A:342-355
B:342-355
[
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:1-436 (gaps) | B:1-436)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGR254W
1
YGR254W.1
VII:1000932-1002245
1314
ENO1_YEAST
1-437
437
2
A:1-436 (gaps)
B:1-436
436
436
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2xh7a1 (A:1-140)
1b: SCOP_d2xh7b1 (B:1-140)
2a: SCOP_d2xh7a2 (A:141-438)
2b: SCOP_d2xh7b2 (B:141-438)
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Classes
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Superfamilies
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Families
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
1a
d2xh7a1
A:1-140
1b
d2xh7b1
B:1-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
2a
d2xh7a2
A:141-438
2b
d2xh7b2
B:141-438
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Enolase_N_2xh7B01 (B:1-133)
1b: PFAM_Enolase_N_2xh7B02 (B:1-133)
2a: PFAM_Enolase_C_2xh7B03 (B:143-434)
2b: PFAM_Enolase_C_2xh7B04 (B:143-434)
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Clans
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)
Clan
:
Enolase_N
(69)
Family
:
Enolase_N
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
1a
Enolase_N-2xh7B01
B:1-133
1b
Enolase_N-2xh7B02
B:1-133
Clan
:
Enolase_TIM
(82)
Family
:
Enolase_C
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
Enolase_C-2xh7B03
B:143-434
2b
Enolase_C-2xh7B04
B:143-434
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Asymmetric Unit 1
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Asym.Unit (153 KB)
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