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Asym. Unit
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Asym.Unit (154 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
ENGINEERING THE ENOLASE ACTIVE SITE POCKET: CRYSTAL STRUCTURE OF THE S39N D321R MUTANT OF YEAST ENOLASE 1
Authors
:
B. Schreier, B. Hocker
Date
:
08 Jun 10 (Deposition) - 25 Aug 10 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lyase, Tim-Barrel, Glycolysis, Gluconeogenesis, Metal Binding, Enolase Superfamily
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Schreier, B. Hoecker
Engineering The Enolase Magnesium Ii Binding Site - Implications For Its Evolution.
Biochemistry V. 49 7582 2010
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
2a: PHOSPHOENOLPYRUVATE (PEPa)
2b: PHOSPHOENOLPYRUVATE (PEPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
5
Ligand/Ion
MAGNESIUM ION
2
PEP
2
Ligand/Ion
PHOSPHOENOLPYRUVATE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:246 , GLU A:295 , ASP A:320 , LYS A:396 , PEP A:1440 , HOH A:2298
BINDING SITE FOR RESIDUE MG A1439
2
AC2
SOFTWARE
GLY A:37 , ALA A:38 , GLU A:168 , GLU A:211 , ASP A:246 , GLU A:295 , ASP A:320 , ARG A:321 , LEU A:343 , LYS A:345 , ARG A:374 , SER A:375 , LYS A:396 , MG A:1439 , HOH A:2233 , HOH A:2407
BINDING SITE FOR RESIDUE PEP A1440
3
AC3
SOFTWARE
ASP A:135 , HOH A:2195 , HOH A:2201 , HOH A:2202 , HOH A:2213 , HOH B:2272
BINDING SITE FOR RESIDUE MG A1441
4
AC4
SOFTWARE
HOH A:2062 , HOH A:2109 , HOH A:2110 , HOH A:2163 , HOH B:2298
BINDING SITE FOR RESIDUE MG A1442
5
AC5
SOFTWARE
ASP B:246 , GLU B:295 , ASP B:320 , PEP B:1440 , HOH B:2293 , HOH B:2392
BINDING SITE FOR RESIDUE MG B1439
6
AC6
SOFTWARE
GLN B:167 , GLU B:168 , ASP B:246 , GLU B:295 , ASP B:320 , LYS B:345 , SER B:372 , SER B:375 , LYS B:396 , MG B:1439 , HOH B:2392 , HOH B:2393
BINDING SITE FOR RESIDUE PEP B1440
7
AC7
SOFTWARE
HOH A:2263 , ASP B:135 , HOH B:2090 , HOH B:2193 , HOH B:2194 , HOH B:2208
BINDING SITE FOR RESIDUE MG B1441
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ENOLASE (A:342-355,B:342-355)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOLASE
PS00164
Enolase signature.
ENO1_YEAST
343-356
2
A:342-355
B:342-355
[
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:1-436 | B:1-436)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGR254W
1
YGR254W.1
VII:1000932-1002245
1314
ENO1_YEAST
1-437
437
2
A:1-436
B:1-436
436
436
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2xgza1 (A:1-140)
1b: SCOP_d2xgzb1 (B:1-140)
2a: SCOP_d2xgza2 (A:141-438)
2b: SCOP_d2xgzb2 (B:141-438)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
1a
d2xgza1
A:1-140
1b
d2xgzb1
B:1-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
2a
d2xgza2
A:141-438
2b
d2xgzb2
B:141-438
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Enolase_N_2xgzB01 (B:1-133)
1b: PFAM_Enolase_N_2xgzB02 (B:1-133)
2a: PFAM_Enolase_C_2xgzB03 (B:143-434)
2b: PFAM_Enolase_C_2xgzB04 (B:143-434)
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Clan
:
Enolase_N
(69)
Family
:
Enolase_N
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
1a
Enolase_N-2xgzB01
B:1-133
1b
Enolase_N-2xgzB02
B:1-133
Clan
:
Enolase_TIM
(82)
Family
:
Enolase_C
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
Enolase_C-2xgzB03
B:143-434
2b
Enolase_C-2xgzB04
B:143-434
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Asymmetric Unit 1
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