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2XGL
Biol. Unit 2
Info
Asym.Unit (69 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
THE X-RAY STRUCTURE OF THE ESCHERICHIA COLI COLICIN M IMMUNITY PROTEIN DEMONSTRATES THE PRESENCE OF A DISULPHIDE BRIDGE, WHICH IS FUNCTIONALLY ESSENTIAL
Authors
:
F. Gerard, M. A. Brooks, H. Barreteau, T. Touze, M. Graille, A. Bouhss, D H. V. Tilbeurgh, D. Mengin-Lecreulx
Date
:
07 Jun 10 (Deposition) - 17 Nov 10 (Release) - 22 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Antibiotic, Bacterial Cell Wall, Bacteriocin Immunity, Bacterial Immunity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Gerard, M. A. Brooks, H. Barreteau, T. Touze, M. Graille, A. Bouhss, D. Blanot, H. V. Tilbeurgh, D. Mengin-Lecreulx
X-Ray Structure And Site-Directed Mutagenesis Analysis Of The Escherichia Coli Colicin M Immunity Protein.
J. Bacteriol. V. 193 205 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
3l: SODIUM ION (NAl)
3m: SODIUM ION (NAm)
3n: SODIUM ION (NAn)
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC2 (SOFTWARE)
15: CC3 (SOFTWARE)
16: CC4 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC6 (SOFTWARE)
19: CC7 (SOFTWARE)
20: CC8 (SOFTWARE)
21: CC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:106 , GLU A:109 , TYR A:111 , ASP B:82 , LYS B:84 , CL B:1118
BINDING SITE FOR RESIDUE CD A1116
02
AC2
SOFTWARE
ASP A:55 , ASP A:79 , GLU B:113
BINDING SITE FOR RESIDUE CD A1117
03
AC3
SOFTWARE
GLU A:113 , ASP B:55 , ASP B:79
BINDING SITE FOR RESIDUE CD A1118
04
AC4
SOFTWARE
GLU A:71 , MET A:100 , CL A:1128 , ASP B:96
BINDING SITE FOR RESIDUE CD A1119
05
AC5
SOFTWARE
GLU A:93 , GLU B:93
BINDING SITE FOR RESIDUE CD A1120
06
AC8
SOFTWARE
TYR A:105 , CYS A:107 , ASN B:45
BINDING SITE FOR RESIDUE NA A1123
07
AC9
SOFTWARE
GLU A:109 , TYR A:111 , ASP B:82
BINDING SITE FOR RESIDUE NA A1124
08
BC2
SOFTWARE
ASP A:82 , LYS A:84 , LYS B:84 , CD B:1116 , NA B:1126
BINDING SITE FOR RESIDUE CL A1126
09
BC3
SOFTWARE
MET A:100 , TYR A:102 , CD A:1119 , ASP B:96
BINDING SITE FOR RESIDUE CL A1128
10
BC7
SOFTWARE
ASP A:82 , LYS A:84 , CL A:1126 , HIS B:106 , GLU B:109 , TYR B:111
BINDING SITE FOR RESIDUE CD B1116
11
BC8
SOFTWARE
ASP A:96 , GLU B:71 , MET B:100 , CL B:1122
BINDING SITE FOR RESIDUE CD B1117
12
BC9
SOFTWARE
LYS A:84 , HIS A:106 , GLU A:109 , CD A:1116 , ASP B:82 , LYS B:84
BINDING SITE FOR RESIDUE CL B1118
13
CC1
SOFTWARE
TYR B:114
BINDING SITE FOR RESIDUE CL B1119
14
CC2
SOFTWARE
LYS B:52 , ASP B:55 , ASP B:79
BINDING SITE FOR RESIDUE NA B1120
15
CC3
SOFTWARE
GLU B:93
BINDING SITE FOR RESIDUE CL B1121
16
CC4
SOFTWARE
ASP A:96 , TYR B:102 , CD B:1117
BINDING SITE FOR RESIDUE CL B1122
17
CC5
SOFTWARE
GLU B:83
BINDING SITE FOR RESIDUE CL B1123
18
CC6
SOFTWARE
GLU B:108
BINDING SITE FOR RESIDUE NA B1125
19
CC7
SOFTWARE
CL A:1126 , LYS B:84
BINDING SITE FOR RESIDUE NA B1126
20
CC8
SOFTWARE
ASP B:57
BINDING SITE FOR RESIDUE NA B1127
21
CC9
SOFTWARE
GLN A:33 , TYR B:105 , CYS B:107 , GLY B:110
BINDING SITE FOR RESIDUE NA B1128
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_YebF_2xglB01 (B:27-115)
1b: PFAM_YebF_2xglB02 (B:27-115)
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Clan
:
no clan defined [family: YebF]
(1)
Family
:
YebF
(1)
Escherichia coli
(1)
1a
YebF-2xglB01
B:27-115
1b
YebF-2xglB02
B:27-115
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Chain B
Asymmetric Unit 1
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Asym.Unit (69 KB)
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