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2XGL
Biol. Unit 1
Info
Asym.Unit (69 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
THE X-RAY STRUCTURE OF THE ESCHERICHIA COLI COLICIN M IMMUNITY PROTEIN DEMONSTRATES THE PRESENCE OF A DISULPHIDE BRIDGE, WHICH IS FUNCTIONALLY ESSENTIAL
Authors
:
F. Gerard, M. A. Brooks, H. Barreteau, T. Touze, M. Graille, A. Bouhss, D H. V. Tilbeurgh, D. Mengin-Lecreulx
Date
:
07 Jun 10 (Deposition) - 17 Nov 10 (Release) - 22 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Antibiotic, Bacterial Cell Wall, Bacteriocin Immunity, Bacterial Immunity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Gerard, M. A. Brooks, H. Barreteau, T. Touze, M. Graille, A. Bouhss, D. Blanot, H. V. Tilbeurgh, D. Mengin-Lecreulx
X-Ray Structure And Site-Directed Mutagenesis Analysis Of The Escherichia Coli Colicin M Immunity Protein.
J. Bacteriol. V. 193 205 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
3i: SODIUM ION (NAi)
3j: SODIUM ION (NAj)
3k: SODIUM ION (NAk)
3l: SODIUM ION (NAl)
3m: SODIUM ION (NAm)
3n: SODIUM ION (NAn)
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC4 (SOFTWARE)
20: CC7 (SOFTWARE)
21: CC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:106 , GLU A:109 , TYR A:111 , ASP B:82 , LYS B:84 , CL B:1118
BINDING SITE FOR RESIDUE CD A1116
02
AC2
SOFTWARE
ASP A:55 , ASP A:79 , GLU B:113
BINDING SITE FOR RESIDUE CD A1117
03
AC3
SOFTWARE
GLU A:113 , ASP B:55 , ASP B:79
BINDING SITE FOR RESIDUE CD A1118
04
AC4
SOFTWARE
GLU A:71 , MET A:100 , CL A:1128 , ASP B:96
BINDING SITE FOR RESIDUE CD A1119
05
AC5
SOFTWARE
GLU A:93 , GLU B:93
BINDING SITE FOR RESIDUE CD A1120
06
AC6
SOFTWARE
TRP A:70
BINDING SITE FOR RESIDUE CL A1121
07
AC7
SOFTWARE
ALA A:30 , CYS A:31 , GLU A:83 , LYS A:84 , GLU A:108 , CL A:1129
BINDING SITE FOR RESIDUE NA A1122
08
AC8
SOFTWARE
TYR A:105 , CYS A:107 , ASN B:45
BINDING SITE FOR RESIDUE NA A1123
09
AC9
SOFTWARE
GLU A:109 , TYR A:111 , ASP B:82
BINDING SITE FOR RESIDUE NA A1124
10
BC1
SOFTWARE
ILE A:73 , GLU A:74 , LEU A:87
BINDING SITE FOR RESIDUE CL A1125
11
BC2
SOFTWARE
ASP A:82 , LYS A:84 , LYS B:84 , CD B:1116 , NA B:1126
BINDING SITE FOR RESIDUE CL A1126
12
BC3
SOFTWARE
MET A:100 , TYR A:102 , CD A:1119 , ASP B:96
BINDING SITE FOR RESIDUE CL A1128
13
BC4
SOFTWARE
GLU A:81 , LYS A:84 , GLU A:108 , NA A:1122
BINDING SITE FOR RESIDUE CL A1129
14
BC5
SOFTWARE
ARG A:40 , TRP A:70 , GLU A:71 , ILE A:73 , VAL A:88 , PRO A:89
BINDING SITE FOR RESIDUE CL A1130
15
BC6
SOFTWARE
GLU A:74 , GLU A:83 , THR A:85 , LEU A:86 , LEU A:87
BINDING SITE FOR RESIDUE NA A1131
16
BC7
SOFTWARE
ASP A:82 , LYS A:84 , CL A:1126 , HIS B:106 , GLU B:109 , TYR B:111
BINDING SITE FOR RESIDUE CD B1116
17
BC8
SOFTWARE
ASP A:96 , GLU B:71 , MET B:100 , CL B:1122
BINDING SITE FOR RESIDUE CD B1117
18
BC9
SOFTWARE
LYS A:84 , HIS A:106 , GLU A:109 , CD A:1116 , ASP B:82 , LYS B:84
BINDING SITE FOR RESIDUE CL B1118
19
CC4
SOFTWARE
ASP A:96 , TYR B:102 , CD B:1117
BINDING SITE FOR RESIDUE CL B1122
20
CC7
SOFTWARE
CL A:1126 , LYS B:84
BINDING SITE FOR RESIDUE NA B1126
21
CC9
SOFTWARE
GLN A:33 , TYR B:105 , CYS B:107 , GLY B:110
BINDING SITE FOR RESIDUE NA B1128
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_YebF_2xglB01 (B:27-115)
1b: PFAM_YebF_2xglB02 (B:27-115)
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Clans
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Clan
:
no clan defined [family: YebF]
(1)
Family
:
YebF
(1)
Escherichia coli
(1)
1a
YebF-2xglB01
B:27-115
1b
YebF-2xglB02
B:27-115
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (69 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
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