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2XG4
Biol. Unit 1
Info
Asym.Unit (127 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
E. COLI P PILUS CHAPERONE-SUBUNIT COMPLEX PAPD-PAPH BOUND TO PILUS BIOGENESIS INHIBITOR, PILICIDE 2C
Authors
:
H. Remaut, G. Phan, F. Buelens, E. Chorell, J. S. Pinkner, S. Edvinsson, F. Almqvist, S. J. Hultgren, G. Waksman
Date
:
30 May 10 (Deposition) - 14 Jul 10 (Release) - 03 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chaperone, Chaperone-Surface Active Protein Complex
(Keyword Search:
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Reference
:
E. Chorell, J. S. Pinkner, G. Phan, S. Edvinsson, F. Buelens, H. Remaut G. Waksman, S. J. Hultgren, F. Almqvist
Design And Synthesis Of C-2 Substituted Thiazolo And Dihydrothiazolo Ring-Fused 2-Pyridones: Pilicides With Increased Antivirulence Activity.
J. Med. Chem. V. 53 5690 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
2a: GLYCEROL (GOLa)
3a: (3R)-8-CYCLOPROPYL-6-(MORPHOLIN-4-... (XC2a)
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Label:
No.
Name
Count
Type
Full Name
1
CO
-1
Ligand/Ion
COBALT (II) ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
XC2
1
Ligand/Ion
(3R)-8-CYCLOPROPYL-6-(MORPHOLIN-4-YLMETHYL)-7-(1-NAPHTHYLMETHYL)-5-OXO-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:32 , ILE A:51 , THR A:53 , SER A:70 , THR A:71 , THR A:72 , PRO A:73
BINDING SITE FOR RESIDUE XC2 A1218
2
AC2
SOFTWARE
HIS B:28
BINDING SITE FOR RESIDUE CO B1174
3
AC3
SOFTWARE
PHE B:85 , ASP B:120 , VAL B:121 , LEU B:137 , LEU B:144 , ASP B:145 , TYR B:146
BINDING SITE FOR RESIDUE GOL B3001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (A:78-95)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
PAPD_ECOLX
99-116
1
A:78-95
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2xg4a2 (A:125-217)
2a: SCOP_d2xg4b_ (B:)
3a: SCOP_d2xg4a1 (A:1-124)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
Periplasmic chaperone C-domain
(33)
Protein domain
:
PapD
(14)
Escherichia coli [TaxId: 562]
(14)
1a
d2xg4a2
A:125-217
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Pilus subunits
(59)
Protein domain
:
PAP fimbrial minor pilin protein PapH
(3)
Escherichia coli [TaxId: 562]
(3)
2a
d2xg4b_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
Pilus chaperone PapD, N-domain
(14)
Escherichia coli [TaxId: 562]
(14)
3a
d2xg4a1
A:1-124
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2xg4A02 (A:122-213)
2a: CATH_2xg4A01 (A:1-121)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1070, no name defined]
(29)
Escherichia coli. Organism_taxid: 562. Strain: j96.
(3)
1a
2xg4A02
A:122-213
Homologous Superfamily
:
PapD-like
(38)
Escherichia coli. Organism_taxid: 562. Strain: j96.
(3)
2a
2xg4A01
A:1-121
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Fimbrial_2xg4B01 (B:25-173)
2a: PFAM_Pili_assembly_N_2xg4A01 (A:1-121)
3a: PFAM_Pili_assembly_C_2xg4A02 (A:141-204)
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Clans
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Organisms
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)
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Clan
:
Adhesin
(36)
Family
:
Fimbrial
(23)
Escherichia coli
(15)
1a
Fimbrial-2xg4B01
B:25-173
Clan
:
E-set
(290)
Family
:
Pili_assembly_N
(20)
Escherichia coli
(8)
2a
Pili_assembly_N-2xg4A01
A:1-121
Clan
:
no clan defined [family: Pili_assembly_C]
(20)
Family
:
Pili_assembly_C
(20)
Escherichia coli
(8)
3a
Pili_assembly_C-2xg4A02
A:141-204
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Asymmetric Unit 1
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