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2XF8
Biol. Unit 4
Info
Asym.Unit (809 KB)
Biol.Unit 1 (210 KB)
Biol.Unit 2 (209 KB)
Biol.Unit 3 (209 KB)
Biol.Unit 4 (207 KB)
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Title
:
STRUCTURE OF THE D-ERYTHROSE-4-PHOSPHATE DEHYDROGENASE FROM E.COLI IN COMPLEX WITH A NAD COFACTOR ANALOG (3-CHLOROACETYL ADENINE PYRIDINE DINUCLEOTIDE) AND SULFATE ANION
Authors
:
S. Moniot, C. Didierjean, S. Boschi-Muller, G. Branlant, C. Corbier
Date
:
20 May 10 (Deposition) - 08 Jun 11 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: M,N,O,P (1x)
Biol. Unit 4: I,J,K,L (1x)
Keywords
:
Aldehyde Dehydrogenase, Hydride Transfer, Cofactor Analog, Pyridoxal Phophate Biosynthesis, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Moniot, C. Didierjean, S. Boschi-Muller, G. Branlant, C. Corbier
Structural Characterization Of Erythrose-4- Phosphate Dehydrogenase From Escherichia Coli: Peculiar Features When Compared To Phosphorylating Gapdhs
To Be Published
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDa)
1b: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDb)
1c: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDc)
1d: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDd)
1e: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDe)
1f: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDf)
1g: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDg)
1h: 3-(CHLOROACETYL) PYRIDINE ADENINED... (3CDh)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3CD
2
Ligand/Ion
3-(CHLOROACETYL) PYRIDINE ADENINEDINUCLEOTIDE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: BC4 (SOFTWARE)
2: BC5 (SOFTWARE)
3: BC6 (SOFTWARE)
4: BC7 (SOFTWARE)
5: BC8 (SOFTWARE)
6: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC4
SOFTWARE
THR I:150 , HIS I:176 , THR I:208 , LYS I:209 , LEU I:210
BINDING SITE FOR RESIDUE SO4 I 500
2
BC5
SOFTWARE
GLY I:7 , GLY I:9 , ARG I:10 , ILE I:11 , ASN I:31 , GLU I:32 , LEU I:33 , GLU I:76 , ARG I:77 , CYS I:95 , GLY I:97 , TYR I:99 , SER I:119 , HIS I:120 , SER I:148 , CYS I:149 , ASN I:313 , HOH I:2006
BINDING SITE FOR RESIDUE 3CD I 600
3
BC6
SOFTWARE
THR J:150 , HIS J:176 , THR J:208 , LYS J:209 , LEU J:210
BINDING SITE FOR RESIDUE SO4 J 500
4
BC7
SOFTWARE
THR K:150 , HIS K:176 , THR K:208 , LYS K:209
BINDING SITE FOR RESIDUE SO4 K 500
5
BC8
SOFTWARE
GLY K:7 , PHE K:8 , GLY K:9 , ARG K:10 , ILE K:11 , ASN K:31 , GLU K:32 , LEU K:33 , CYS K:95 , THR K:96 , GLY K:97 , TYR K:99 , SER K:119 , SER K:148 , CYS K:149 , PHE K:317 , GLN P:63 , ALA P:70
BINDING SITE FOR RESIDUE 3CD K 600
6
BC9
SOFTWARE
THR L:150 , HIS L:176 , THR L:208 , LYS L:209
BINDING SITE FOR RESIDUE SO4 L 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (I:147-154,J:147-154,K:147-154,L:14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
E4PD_ECOLI
153-160
4
-
-
-
-
-
-
-
-
I:147-154
J:147-154
K:147-154
L:147-154
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 32)
Info
all PFAM domains
1a: PFAM_Gp_dh_C_2xf8P01 (P:154-311)
1b: PFAM_Gp_dh_C_2xf8P02 (P:154-311)
1c: PFAM_Gp_dh_C_2xf8P03 (P:154-311)
1d: PFAM_Gp_dh_C_2xf8P04 (P:154-311)
1e: PFAM_Gp_dh_C_2xf8P05 (P:154-311)
1f: PFAM_Gp_dh_C_2xf8P06 (P:154-311)
1g: PFAM_Gp_dh_C_2xf8P07 (P:154-311)
1h: PFAM_Gp_dh_C_2xf8P08 (P:154-311)
1i: PFAM_Gp_dh_C_2xf8P09 (P:154-311)
1j: PFAM_Gp_dh_C_2xf8P10 (P:154-311)
1k: PFAM_Gp_dh_C_2xf8P11 (P:154-311)
1l: PFAM_Gp_dh_C_2xf8P12 (P:154-311)
1m: PFAM_Gp_dh_C_2xf8P13 (P:154-311)
1n: PFAM_Gp_dh_C_2xf8P14 (P:154-311)
1o: PFAM_Gp_dh_C_2xf8P15 (P:154-311)
1p: PFAM_Gp_dh_C_2xf8P16 (P:154-311)
2a: PFAM_Gp_dh_N_2xf8P17 (P:1-149)
2b: PFAM_Gp_dh_N_2xf8P18 (P:1-149)
2c: PFAM_Gp_dh_N_2xf8P19 (P:1-149)
2d: PFAM_Gp_dh_N_2xf8P20 (P:1-149)
2e: PFAM_Gp_dh_N_2xf8P21 (P:1-149)
2f: PFAM_Gp_dh_N_2xf8P22 (P:1-149)
2g: PFAM_Gp_dh_N_2xf8P23 (P:1-149)
2h: PFAM_Gp_dh_N_2xf8P24 (P:1-149)
2i: PFAM_Gp_dh_N_2xf8P25 (P:1-149)
2j: PFAM_Gp_dh_N_2xf8P26 (P:1-149)
2k: PFAM_Gp_dh_N_2xf8P27 (P:1-149)
2l: PFAM_Gp_dh_N_2xf8P28 (P:1-149)
2m: PFAM_Gp_dh_N_2xf8P29 (P:1-149)
2n: PFAM_Gp_dh_N_2xf8P30 (P:1-149)
2o: PFAM_Gp_dh_N_2xf8P31 (P:1-149)
2p: PFAM_Gp_dh_N_2xf8P32 (P:1-149)
View:
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
GADPH_aa-bio_dh
(59)
Family
:
Gp_dh_C
(38)
Escherichia coli (strain K12)
(5)
1a
Gp_dh_C-2xf8P01
P:154-311
1b
Gp_dh_C-2xf8P02
P:154-311
1c
Gp_dh_C-2xf8P03
P:154-311
1d
Gp_dh_C-2xf8P04
P:154-311
1e
Gp_dh_C-2xf8P05
P:154-311
1f
Gp_dh_C-2xf8P06
P:154-311
1g
Gp_dh_C-2xf8P07
P:154-311
1h
Gp_dh_C-2xf8P08
P:154-311
1i
Gp_dh_C-2xf8P09
P:154-311
1j
Gp_dh_C-2xf8P10
P:154-311
1k
Gp_dh_C-2xf8P11
P:154-311
1l
Gp_dh_C-2xf8P12
P:154-311
1m
Gp_dh_C-2xf8P13
P:154-311
1n
Gp_dh_C-2xf8P14
P:154-311
1o
Gp_dh_C-2xf8P15
P:154-311
1p
Gp_dh_C-2xf8P16
P:154-311
Clan
:
NADP_Rossmann
(1239)
Family
:
Gp_dh_N
(38)
Escherichia coli (strain K12)
(5)
2a
Gp_dh_N-2xf8P17
P:1-149
2b
Gp_dh_N-2xf8P18
P:1-149
2c
Gp_dh_N-2xf8P19
P:1-149
2d
Gp_dh_N-2xf8P20
P:1-149
2e
Gp_dh_N-2xf8P21
P:1-149
2f
Gp_dh_N-2xf8P22
P:1-149
2g
Gp_dh_N-2xf8P23
P:1-149
2h
Gp_dh_N-2xf8P24
P:1-149
2i
Gp_dh_N-2xf8P25
P:1-149
2j
Gp_dh_N-2xf8P26
P:1-149
2k
Gp_dh_N-2xf8P27
P:1-149
2l
Gp_dh_N-2xf8P28
P:1-149
2m
Gp_dh_N-2xf8P29
P:1-149
2n
Gp_dh_N-2xf8P30
P:1-149
2o
Gp_dh_N-2xf8P31
P:1-149
2p
Gp_dh_N-2xf8P32
P:1-149
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