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2XE6
Asym. Unit
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Asym.Unit (140 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE OPEN BINARY COMPLEX WITH 3PG
Authors
:
M. J. Cliff, N. J. Baxter, G. M. Blackburn, A. Merli, M. Vas, J. P. Waltho, M. W. Bowler
Date
:
11 May 10 (Deposition) - 19 Jan 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transition State Analogue, Hereditary Hemolytic Anemia, Phosphoprotein, Glycolysis, Transferase, Phosphoryl Transfer, Nucleotide-Binding, Domain Motions
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Zerrad, A. Merli, G. F. Schroder, A. Varga, E. Graczer, P. Pernot, A. Round, M. Vas, M. W. Bowler
A Spring Loaded Release Mechanism Regulates Domain Movement And Catalysis In Phosphoglycerate Kinase.
J. Biol. Chem. V. 286 14040 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3-PHOSPHOGLYCERIC ACID (3PGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PG
1
Ligand/Ion
3-PHOSPHOGLYCERIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:23 , ASN A:25 , ARG A:38 , HIS A:62 , ARG A:65 , ARG A:122 , GLY A:166 , THR A:167 , ARG A:170 , HOH A:2356 , HOH A:2357 , HOH A:2358 , HOH A:2359 , HOH A:2360
BINDING SITE FOR RESIDUE 3PG A1417
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_006076 (L87P, chain A, )
02: VAR_006077 (G157V, chain A, )
03: VAR_006078 (D163V, chain A, )
04: VAR_006080 (R205P, chain A, )
05: VAR_006081 (E251A, chain A, )
06: VAR_006082 (V265M, chain A, )
07: VAR_006083 (D267N, chain A, )
08: VAR_006084 (D284V, chain A, )
09: VAR_006085 (D314N, chain A, )
10: VAR_006086 (C315R, chain A, )
11: VAR_006087 (T351N, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006076
L
88
P
PGK1_HUMAN
Disease (PGK1D)
---
A
L
87
P
02
UniProt
VAR_006077
G
158
V
PGK1_HUMAN
Disease (PGK1D)
---
A
G
157
V
03
UniProt
VAR_006078
D
164
V
PGK1_HUMAN
Disease (PGK1D)
---
A
D
163
V
04
UniProt
VAR_006080
R
206
P
PGK1_HUMAN
Disease (PGK1D)
---
A
R
205
P
05
UniProt
VAR_006081
E
252
A
PGK1_HUMAN
Disease (PGK1D)
---
A
E
251
A
06
UniProt
VAR_006082
V
266
M
PGK1_HUMAN
Disease (PGK1D)
---
A
V
265
M
07
UniProt
VAR_006083
D
268
N
PGK1_HUMAN
Unclassified
---
A
D
267
N
08
UniProt
VAR_006084
D
285
V
PGK1_HUMAN
Disease (PGK1D)
---
A
D
284
V
09
UniProt
VAR_006085
D
315
N
PGK1_HUMAN
Disease (PGK1D)
---
A
D
314
N
10
UniProt
VAR_006086
C
316
R
PGK1_HUMAN
Disease (PGK1D)
---
A
C
315
R
11
UniProt
VAR_006087
T
352
N
PGK1_HUMAN
Polymorphism
---
A
T
351
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PGLYCERATE_KINASE (A:17-27)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PGLYCERATE_KINASE
PS00111
Phosphoglycerate kinase signature.
PGK1_HUMAN
18-28
1
A:17-27
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2xe6a_ (A:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate kinase
(42)
Superfamily
:
Phosphoglycerate kinase
(42)
Family
:
Phosphoglycerate kinase
(39)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d2xe6a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PGK_2xe6A01 (A:7-405)
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)
(
)
Clan
:
no clan defined [family: PGK]
(23)
Family
:
PGK
(23)
Homo sapiens (Human)
(12)
1a
PGK-2xe6A01
A:7-405
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Chain A
Asymmetric Unit 1
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