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Biol. Unit 1
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Asym.Unit (182 KB)
Biol.Unit 1 (683 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE D52N VARIANT OF CYTOSOLIC 5'-NUCLEOTIDASE II IN COMPLEX WITH INOSINE MONOPHOSPHATE AND ATP
Authors
:
K. Wallden, P. Nordlund
Date
:
26 Apr 10 (Deposition) - 16 Mar 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Cn-Ii, Gmp-Imp Specific Nucleotidase, High Km 5-Prime Nucleotidase, Hydrolase, Metal-Binding, Nt5C2, Nucleotide Metabolism, Nucleotide- Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Wallden, P. Nordlund
Structural Basis For The Allosteric Regulation And Substrate Recognition Of Human Cytosolic 5'-Nucleotidase Ii
J. Mol. Biol. V. 408 684 2011
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: INOSINIC ACID (IMPa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
GOL
24
Ligand/Ion
GLYCEROL
3
IMP
4
Ligand/Ion
INOSINIC ACID
4
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:144 , ASP A:145 , THR A:147 , ILE A:152 , ASN A:154 , PHE A:354 , LYS A:362 , GLN A:453 , ARG A:456 , TYR A:457 , GOL A:1495 , MG A:1497 , HOH A:2154 , HOH A:2386 , HOH A:2387 , HOH A:2388 , HOH A:2389 , HOH A:2390 , HOH A:2391 , HOH A:2392 , HOH A:2393 , HOH A:2394 , HOH A:2395 , HOH A:2396 , HOH A:2397
BINDING SITE FOR RESIDUE ATP A1489
02
AC2
SOFTWARE
ASN A:52 , MET A:53 , ASP A:54 , PHE A:157 , ARG A:202 , ASP A:206 , HIS A:209 , TYR A:210 , LYS A:215 , THR A:249 , ASN A:250 , SER A:251 , LYS A:292 , MG A:1498 , HOH A:2170 , HOH A:2214 , HOH A:2283 , HOH A:2331 , HOH A:2332 , HOH A:2398 , HOH A:2399 , HOH A:2400
BINDING SITE FOR RESIDUE IMP A1490
03
AC3
SOFTWARE
PHE A:283 , ASP A:284 , LEU A:321 , GLN A:322 , HIS A:323 , GLY A:324 , ILE A:325 , HOH A:2274 , HOH A:2401
BINDING SITE FOR RESIDUE GOL A1491
04
AC4
SOFTWARE
PHE A:198 , GLN A:199 , ARG A:202 , ASP A:206 , HOH A:2402 , HOH A:2403
BINDING SITE FOR RESIDUE GOL A1492
05
AC5
SOFTWARE
PRO A:96 , THR A:97 , GLU A:374 , GLU A:378 , TYR A:434 , HOH A:2344 , HOH A:2404 , HOH A:2405
BINDING SITE FOR RESIDUE GOL A1493
06
AC6
SOFTWARE
ASP A:257 , THR A:261 , PRO A:278 , TRP A:279 , GLN A:280 , HOH A:2240 , HOH A:2406
BINDING SITE FOR RESIDUE GOL A1494
07
AC7
SOFTWARE
TYR A:151 , ILE A:152 , LEU A:153 , ASN A:154 , ASN A:158 , HIS A:352 , ATP A:1489 , HOH A:2407 , HOH A:2409
BINDING SITE FOR RESIDUE GOL A1495
08
AC8
SOFTWARE
ASP A:252 , TYR A:253 , VAL A:288 , ASP A:289 , GLY A:310 , LEU A:312
BINDING SITE FOR RESIDUE GOL A1496
09
AC9
SOFTWARE
ATP A:1489 , HOH A:2396
BINDING SITE FOR RESIDUE MG A1497
10
BC1
SOFTWARE
ASN A:52 , ASP A:54 , ASP A:351 , IMP A:1490 , HOH A:2331 , HOH A:2332
BINDING SITE FOR RESIDUE MG A1498
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024244 (T3A, chain A, )
2: VAR_030242 (Q136R, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024244
T
3
A
5NTC_HUMAN
Polymorphism
10883841
A
T
3
A
2
UniProt
VAR_030242
Q
136
R
5NTC_HUMAN
Polymorphism
12262171
A
Q
136
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_5_nucleotid_2xcwA01 (A:35-488)
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Clan
:
HAD
(186)
Family
:
5_nucleotid
(10)
Homo sapiens (Human)
(10)
1a
5_nucleotid-2xcwA01
A:35-488
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Asym.Unit (182 KB)
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