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2XCV
Biol. Unit 1
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Asym.Unit (92 KB)
Biol.Unit 1 (335 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE D52N VARIANT OF CYTOSOLIC 5'-NUCLEOTIDASE II IN COMPLEX WITH INOSINE MONOPHOSPHATE AND 2,3-BISPHOSPHOGLYCERATE
Authors
:
K. Wallden, P. Nordlund
Date
:
26 Apr 10 (Deposition) - 16 Mar 11 (Release) - 20 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Hydrolase, Metal-Binding, Nucleotide Metabolism
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Wallden, P. Nordlund
Structural Basis For The Allosteric Regulation And Substrate Recognition Of Human Cytosolic 5'-Nucleotidase Ii
J. Mol. Biol. V. 408 684 2011
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: (2R)-2,3-DIPHOSPHOGLYCERIC ACID (DG2a)
2a: GLYCEROL (GOLa)
3a: INOSINIC ACID (IMPa)
4a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
DG2
4
Ligand/Ion
(2R)-2,3-DIPHOSPHOGLYCERIC ACID
2
GOL
4
Ligand/Ion
GLYCEROL
3
IMP
4
Ligand/Ion
INOSINIC ACID
4
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:144 , LYS A:362 , ARG A:456 , TYR A:457
BINDING SITE FOR RESIDUE DG2 A1489
2
AC2
SOFTWARE
PHE A:283 , ASP A:284 , LEU A:285 , ILE A:286 , GLN A:322 , GLY A:324 , ILE A:325 , HOH A:2256
BINDING SITE FOR RESIDUE GOL A1490
3
AC3
SOFTWARE
ASN A:52 , MET A:53 , ASP A:54 , PHE A:157 , ARG A:202 , ASP A:206 , HIS A:209 , TYR A:210 , LYS A:215 , THR A:249 , ASN A:250 , SER A:251 , LYS A:292 , MG A:1492 , HOH A:2107 , HOH A:2215 , HOH A:2218 , HOH A:2257
BINDING SITE FOR RESIDUE IMP A1491
4
AC4
SOFTWARE
ASN A:52 , ASP A:54 , ASP A:351 , IMP A:1491 , HOH A:2215 , HOH A:2218
BINDING SITE FOR RESIDUE MG A1492
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024244 (T3A, chain A, )
2: VAR_030242 (Q136R, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024244
T
3
A
5NTC_HUMAN
Polymorphism
10883841
A
T
3
A
2
UniProt
VAR_030242
Q
136
R
5NTC_HUMAN
Polymorphism
12262171
A
Q
136
R
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
(, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_5_nucleotid_2xcvA01 (A:35-488)
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Clan
:
HAD
(186)
Family
:
5_nucleotid
(10)
Homo sapiens (Human)
(10)
1a
5_nucleotid-2xcvA01
A:35-488
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