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2XCT
Asym. Unit
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Asym.Unit (943 KB)
Biol.Unit 1 (469 KB)
Biol.Unit 2 (469 KB)
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(1)
Title
:
THE TWINNED 3.35A STRUCTURE OF S. AUREUS GYRASE COMPLEX WITH CIPROFLOXACIN AND DNA
Authors
:
B. D. Bax, P. Chan, D. S. Eggleston, A. Fosberry, D. R. Gentry, F. Gorrec, I. Giordano, M. M. Hann, A. Hennessy, M. Hibbs, J. Huang, E. Jones, J. Jo K. K. Brown, C. J. Lewis, E. May, O. Singh, C. Spitzfaden, C. Shen, A. Shi A. Theobald, A. Wohlkonig, N. D. Pearson, M. N. Gwynn
Date
:
25 Apr 10 (Deposition) - 25 Aug 10 (Release) - 25 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.35
Chains
:
Asym. Unit : B,D,E,F,G,H,S,U,V,W,X,Y
Biol. Unit 1: B,D,E,F,G,H (1x)
Biol. Unit 2: S,U,V,W,X,Y (1x)
Keywords
:
Isomerase-Dna-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. D. Bax, P. F. Chan, D. S. Eggleston, A. Fosberry, D. R. Gentry, F. Gorrec, I. Giordano, M. M. Hann, A. Hennessy, M. Hibbs, J. Huang, E. Jones, J. Jones, K. K. Brown, C. J. Lewis, E. W. May, M. R. Saunders, O. Singh, C. Spitzfaden, C. Shen, A. Shillings, A. F. Theobald, A. Wohlkonig, N. D. Pearson, M. N. Gwynn
Type Iia Topoisomerase Inhibition By A New Class Of Antibacterial Agents.
Nature V. 466 935 2010
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIP... (CPFa)
1b: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIP... (CPFb)
1c: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIP... (CPFc)
1d: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIP... (CPFd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
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No.
Name
Count
Type
Full Name
1
CPF
4
Ligand/Ion
1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
2
MN
8
Ligand/Ion
MANGANESE (II) ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:508 , ASP B:510
BINDING SITE FOR RESIDUE MN B2492
02
AC2
SOFTWARE
ASP D:508 , ASP D:510
BINDING SITE FOR RESIDUE MN D2492
03
AC3
SOFTWARE
ARG B:458 , SER B:1084 , DT E:8 , DG G:9 , MN G:2000 , DC H:12 , DA H:13
BINDING SITE FOR RESIDUE CPF G1020
04
AC4
SOFTWARE
ARG D:458 , GLU D:477 , SER D:1084 , DG F:8 , MN F:2000 , DC G:12 , DC G:13 , DG H:9
BINDING SITE FOR RESIDUE CPF H1020
05
AC5
SOFTWARE
CPF G:1020
BINDING SITE FOR RESIDUE MN G2000
06
AC6
SOFTWARE
CPF H:1020
BINDING SITE FOR RESIDUE MN F2000
07
AC7
SOFTWARE
CPF X:1020 , DG Y:9
BINDING SITE FOR RESIDUE MN W2000
08
AC8
SOFTWARE
CPF Y:1020
BINDING SITE FOR RESIDUE MN W2001
09
AC9
SOFTWARE
ASP S:508 , ASP S:510
BINDING SITE FOR RESIDUE MN S2492
10
BC1
SOFTWARE
ASP U:508 , ASP U:510
BINDING SITE FOR RESIDUE MN U2492
11
BC2
SOFTWARE
ARG S:458 , GLY S:459 , DG W:8 , MN W:2000 , DC X:12 , DC X:13 , DG Y:9
BINDING SITE FOR RESIDUE CPF X1020
12
BC3
SOFTWARE
SER S:1084 , ARG U:458 , DT V:8 , MN W:2001 , DG X:9 , DC Y:12 , DA Y:13
BINDING SITE FOR RESIDUE CPF Y1020
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_DNA_topoisoIV_2xctU01 (U:1033-1474)
1b: PFAM_DNA_topoisoIV_2xctU02 (U:1033-1474)
1c: PFAM_DNA_topoisoIV_2xctU03 (U:1033-1474)
1d: PFAM_DNA_topoisoIV_2xctU04 (U:1033-1474)
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Clans
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Clan
:
no clan defined [family: DNA_topoisoIV]
(19)
Family
:
DNA_topoisoIV
(19)
Staphylococcus aureus (strain N315)
(5)
1a
DNA_topoisoIV-2xctU01
U:1033-1474
1b
DNA_topoisoIV-2xctU02
U:1033-1474
1c
DNA_topoisoIV-2xctU03
U:1033-1474
1d
DNA_topoisoIV-2xctU04
U:1033-1474
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Asym.Unit (943 KB)
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