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2XBP
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
A NOVEL SIGNAL TRANSDUCTION PROTEIN PII VARIANT FROM SYNECHOCOCCUS ELONGATUS PCC7942 INDICATES A TWO-STEP PROCESS FOR NAGK PII COMPLEX FORMATION
Authors
:
O. Fokina, V. R. Chellamuthu, K. Zeth, K. Forchhammer
Date
:
14 Apr 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Nucleotide-Binding, Transcription Regulation, Transcription, Phosphoprotein, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Fokina, V. R. Chellamuthu, K. Zeth, K. Forchhammer
A Novel Signal Transduction Protein P(Ii) Variant From Synechococcus Elongatus Pcc 7942 Indicates A Two-Step Process For Nagk- P(Ii) Complex Formation.
J. Mol. Biol. V. 399 410 2010
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:7 , GLY A:27 , MET A:28 , THR A:29 , GLY A:35 , PHE A:36 , GLY A:37 , GLN A:39 , GLU A:62 , VAL A:64 , ASN A:86 , GLY A:87 , ASP A:88 , GLY A:89 , LYS A:90 , ARG A:101 , ARG A:103 , MG A:1115 , HOH A:2059 , HOH A:2075 , HOH A:2139 , HOH A:2171 , HOH A:2172 , HOH A:2173 , HOH A:2174
BINDING SITE FOR RESIDUE ATP A1114
2
AC2
SOFTWARE
GLY A:37 , ATP A:1114 , HOH A:2059 , HOH A:2139
BINDING SITE FOR RESIDUE MG A1115
3
AC3
SOFTWARE
ARG A:82 , GLY A:84
BINDING SITE FOR RESIDUE CL A1116
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PII_GLNB_DOM (A:1-112)
2: PII_GLNB_UMP (A:46-51)
3: PII_GLNB_CTER (A:83-96)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PII_GLNB_DOM
PS51343
P-II protein family profile.
GLNB_SYNE7
1-112
1
A:1-112
2
PII_GLNB_UMP
PS00496
P-II protein uridylation site.
GLNB_SYNE7
46-51
1
A:46-51
3
PII_GLNB_CTER
PS00638
P-II protein C-terminal region signature.
GLNB_SYNE7
83-96
1
A:83-96
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d2xbpa_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
GlnB-like
(79)
Family
:
Prokaryotic signal transducing protein
(31)
Protein domain
:
automated matches
(9)
Synechococcus elongatus PCC 7942 [TaxId: 1140]
(3)
1a
d2xbpa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2xbpA00 (A:1-113)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.120, no name defined]
(37)
Synechococcus elongatus. Organism_taxid: 1140. Strain: pcc 7942.
(4)
1a
2xbpA00
A:1-113
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_P_II_2xbpA01 (A:4-105)
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Clan
:
GlnB-like
(50)
Family
:
P-II
(26)
Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
(7)
1a
P-II-2xbpA01
A:4-105
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Chain A
Asymmetric Unit 1
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