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2XBL
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (252 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GMHA FROM BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH PRODUCT
Authors
:
N. J. Harmer
Date
:
13 Apr 10 (Deposition) - 19 May 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Capsule, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
N. J. Harmer
The Structure Of Sedoheptulose-7-Phosphate Isomerase From Burkholderia Pseudomallei Reveals A Zinc Binding Site At The Heart Of The Active Site.
J. Mol. Biol. V. 400 379 2010
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPH... (M7Pa)
1b: D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPH... (M7Pb)
1c: D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPH... (M7Pc)
1d: D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPH... (M7Pd)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
3a: TETRAETHYLENE GLYCOL (PG4a)
4a: TRIETHYLENE GLYCOL (PGEa)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
M7P
4
Ligand/Ion
D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE
2
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
5
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:64 , GLU A:68 , HIS A:183 , GLN D:175 , M7P D:1199
BINDING SITE FOR RESIDUE ZN A1197
02
AC2
SOFTWARE
GLN B:175 , M7P B:1197 , HIS C:64 , GLU C:68 , HIS C:183
BINDING SITE FOR RESIDUE ZN C1196
03
AC3
SOFTWARE
HIS B:64 , GLU B:68 , HIS B:183 , GLN C:175 , M7P C:1197
BINDING SITE FOR RESIDUE ZN B1196
04
AC4
SOFTWARE
GLN A:175 , M7P A:1198 , HIS D:64 , GLU D:68 , HIS D:183
BINDING SITE FOR RESIDUE ZN D1198
05
AC5
SOFTWARE
GLU A:68 , ARG A:72 , ZN A:1197 , ASN C:97 , ASP C:98 , HOH C:2126 , ASN D:55 , GLY D:56 , GLY D:57 , SER D:123 , THR D:124 , SER D:125 , SER D:128 , THR D:171 , GLN D:175 , HOH D:2205 , HOH D:2206 , HOH D:2207 , HOH D:2208 , HOH D:2209 , HOH D:2210
BINDING SITE FOR RESIDUE M7P D1199
06
AC6
SOFTWARE
ASN A:97 , ASP A:98 , ASN B:55 , GLY B:56 , GLY B:57 , SER B:123 , THR B:124 , SER B:125 , SER B:128 , THR B:171 , GLN B:175 , HOH B:2113 , HOH B:2179 , HOH B:2245 , HOH B:2246 , HOH B:2247 , HOH B:2248 , HOH B:2249 , GLU C:68 , ARG C:72 , ZN C:1196 , HOH C:2108 , HOH C:2110
BINDING SITE FOR RESIDUE M7P B1197
07
AC7
SOFTWARE
ASN A:55 , GLY A:56 , GLY A:57 , SER A:123 , THR A:124 , SER A:125 , SER A:128 , THR A:171 , GLN A:175 , HOH A:2188 , HOH A:2260 , HOH A:2261 , HOH A:2262 , HOH A:2263 , HOH A:2264 , ALA B:94 , ASN B:97 , ASP B:98 , HOH B:2146 , GLU D:68 , ARG D:72 , ZN D:1198 , HOH D:2088
BINDING SITE FOR RESIDUE M7P A1198
08
AC8
SOFTWARE
GLU B:68 , ARG B:72 , ZN B:1196 , ASN C:55 , GLY C:56 , GLY C:57 , SER C:123 , THR C:124 , SER C:125 , SER C:128 , THR C:171 , GLN C:175 , HOH C:2096 , HOH C:2213 , HOH C:2214 , HOH C:2215 , HOH C:2216 , HOH C:2217 , HOH C:2218 , ASN D:97 , ASP D:98 , HOH D:2109
BINDING SITE FOR RESIDUE M7P C1197
09
AC9
SOFTWARE
ALA D:31 , THR D:32 , LYS D:35
BINDING SITE FOR RESIDUE PEG D1200
10
BC1
SOFTWARE
ALA C:31 , THR C:32 , LYS C:35
BINDING SITE FOR RESIDUE PGE C1198
11
BC2
SOFTWARE
ALA A:31 , THR A:32 , LYS A:35 , LEU A:162
BINDING SITE FOR RESIDUE PG4 A1199
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SIS (A:40-196,B:40-195,C:40-195,D:40-19...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
GMHA_BURPS
40-197
4
A:40-196
B:40-195
C:40-195
D:40-197
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2xbla_ (A:)
1b: SCOP_d2xblb_ (B:)
1c: SCOP_d2xblc_ (C:)
1d: SCOP_d2xbld_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Burkholderia pseudomallei [TaxId: 272560]
(2)
1a
d2xbla_
A:
1b
d2xblb_
B:
1c
d2xblc_
C:
1d
d2xbld_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_SIS_2_2xblD01 (D:7-150)
1b: PFAM_SIS_2_2xblD02 (D:7-150)
1c: PFAM_SIS_2_2xblD03 (D:7-150)
1d: PFAM_SIS_2_2xblD04 (D:7-150)
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Clan
:
SIS
(53)
Family
:
SIS_2
(6)
Burkholderia pseudomallei (Pseudomonas pseudomallei)
(2)
1a
SIS_2-2xblD01
D:7-150
1b
SIS_2-2xblD02
D:7-150
1c
SIS_2-2xblD03
D:7-150
1d
SIS_2-2xblD04
D:7-150
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