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2XAY
Asym. Unit
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Asym.Unit (379 KB)
Biol.Unit 1 (732 KB)
Biol.Unit 2 (739 KB)
Biol.Unit 3 (6 KB)
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(1)
Title
:
RIBONUCLEOTIDE REDUCTASE Y730NO2Y AND C439A MODIFIED R1 SUBUNIT OF E. COLI
Authors
:
K. Yokoyama, U. Uhlin, J. Stubbe
Date
:
01 Apr 10 (Deposition) - 14 Apr 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,P
Biol. Unit 1: A,B,D,E (3x)
Biol. Unit 2: C,F (6x)
Biol. Unit 3: P (1x)
Keywords
:
Oxidoreductase, Nucleotide-Binding, Alternative Initiation, Dna Replication, Allosteric Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Yokoyama, U. Uhlin, J. Stubbe
Site-Specific Incorporation Of 3-Nitrotyrosine As A Probe Of Pk(A) Perturbation Of Redox-Active Tyrosines In Ribonucleotide Reductase.
J. Am. Chem. Soc. V. 132 8385 2010
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: META-NITRO-TYROSINE (NIYa)
1b: META-NITRO-TYROSINE (NIYb)
1c: META-NITRO-TYROSINE (NIYc)
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No.
Name
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Type
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1
NIY
3
Mod. Amino Acid
META-NITRO-TYROSINE
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Sites
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PROSITE Patterns/Profiles
(2, 6)
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1: ATP_CONE (A:5-95,B:5-95,C:5-95)
2: RIBORED_LARGE (A:599-621,B:599-621,C:599-621)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATP_CONE
PS51161
ATP-cone domain profile.
RIR1_ECOLI
5-95
3
A:5-95
B:5-95
C:5-95
2
RIBORED_LARGE
PS00089
Ribonucleotide reductase large subunit signature.
RIR1_ECOLI
599-621
3
A:599-621
B:599-621
C:599-621
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(3, 9)
Info
all PFAM domains
1a: PFAM_Ribonuc_red_lgC_2xayC01 (C:222-732)
1b: PFAM_Ribonuc_red_lgC_2xayC02 (C:222-732)
1c: PFAM_Ribonuc_red_lgC_2xayC03 (C:222-732)
2a: PFAM_ATP_cone_2xayC04 (C:5-92)
2b: PFAM_ATP_cone_2xayC05 (C:5-92)
2c: PFAM_ATP_cone_2xayC06 (C:5-92)
3a: PFAM_Ribonuc_red_lgN_2xayC07 (C:141-220)
3b: PFAM_Ribonuc_red_lgN_2xayC08 (C:141-220)
3c: PFAM_Ribonuc_red_lgN_2xayC09 (C:141-220)
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Clans
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Organisms
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)
(
)
Clan
:
PFL-like
(29)
Family
:
Ribonuc_red_lgC
(23)
Escherichia coli (strain K12)
(12)
1a
Ribonuc_red_lgC-2xayC01
C:222-732
1b
Ribonuc_red_lgC-2xayC02
C:222-732
1c
Ribonuc_red_lgC-2xayC03
C:222-732
Clan
:
no clan defined [family: ATP-cone]
(16)
Family
:
ATP-cone
(16)
Escherichia coli (strain K12)
(12)
2a
ATP-cone-2xayC04
C:5-92
2b
ATP-cone-2xayC05
C:5-92
2c
ATP-cone-2xayC06
C:5-92
Clan
:
no clan defined [family: Ribonuc_red_lgN]
(22)
Family
:
Ribonuc_red_lgN
(22)
Escherichia coli (strain K12)
(12)
3a
Ribonuc_red_lgN-2xayC07
C:141-220
3b
Ribonuc_red_lgN-2xayC08
C:141-220
3c
Ribonuc_red_lgN-2xayC09
C:141-220
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Asym.Unit (379 KB)
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Header - Biol.Unit 1
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