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2XA7
Asym. Unit
Info
Asym.Unit (617 KB)
Biol.Unit 1 (605 KB)
Biol.Unit 2 (603 KB)
Biol.Unit 3 (8 KB)
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(1)
Title
:
AP2 CLATHRIN ADAPTOR CORE IN ACTIVE COMPLEX WITH CARGO PEPTIDES
Authors
:
L. P. Jackson, B. T. Kelly, A. J. Mccoy, P. R. Evans, D. J. Owen
Date
:
29 Mar 10 (Deposition) - 21 Jul 10 (Release) - 13 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,M,P,S
Biol. Unit 1: A,B,M,P,S (1x)
Biol. Unit 2: A,B,M,S (1x)
Biol. Unit 3: P (1x)
Keywords
:
Phosphoprotein, Protein Transport, Endocytosis, Cell Membrane, Lipid-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. P. Jackson, B. T. Kelly, A. J. Mccoy, T. Gaffry, L. C. James, B. M. Collins, S. Honing, P. R. Evans, D. J. Owen
A Large Scale Conformational Change Couples Membrane Recruitment To Cargo Binding In The Ap2 Clathrin Adaptor Complex
Cell(Cambridge, Mass. ) V. 141 1241 2010
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:21 , ARG S:15
BINDING SITE FOR RESIDUE SO4 A1622
2
AC2
SOFTWARE
ASP A:382 , VAL A:383 , SER A:384 , ARG S:42
BINDING SITE FOR RESIDUE SO4 A1623
3
AC3
SOFTWARE
LYS B:12 , GLY B:13 , ILE B:15 , LYS B:45 , ASP S:43 , ALA S:44 , ARG S:61
BINDING SITE FOR RESIDUE SO4 S1143
4
AC4
SOFTWARE
HIS A:527 , VAL A:562 , SER A:565 , SER A:567 , GLN A:568
BINDING SITE FOR RESIDUE SO4 A1624
5
AC5
SOFTWARE
ASN S:48 , ARG S:60 , ARG S:61
BINDING SITE FOR RESIDUE SO4 S1144
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: CLAT_ADAPTOR_S (S:57-67)
2: CLAT_ADAPTOR_M_1 (M:159-179)
3: MHD (M:170-445)
4: CLAT_ADAPTOR_M_2 (M:274-288)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLAT_ADAPTOR_S
PS00989
Clathrin adaptor complexes small chain signature.
AP2S1_MOUSE
57-67
1
S:57-67
2
CLAT_ADAPTOR_M_1
PS00990
Clathrin adaptor complexes medium chain signature 1.
AP2M1_RAT
159-179
1
M:159-179
3
MHD
PS51072
Mu homology domain (MHD) profile.
AP2M1_RAT
170-434
1
M:170-445
4
CLAT_ADAPTOR_M_2
PS00991
Clathrin adaptor complexes medium chain signature 2.
AP2M1_RAT
263-277
1
M:274-288
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (S:1-1)
Exon 1.2b (S:2-51)
Exon 1.3b (S:52-89)
Exon 1.4 (S:90-109)
Exon 1.5a (S:110-142)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3b
4: Boundary 1.3b/1.4
5: Boundary 1.4/1.5a
6: Boundary 1.5a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000086112
1a
ENSMUSE00000599786
chr7:
17323759-17323887
129
AP2S1_MOUSE
1-1
1
1
S:1-1
1
1.2b
ENSMUST00000086112
2b
ENSMUSE00000336284
chr7:
17328568-17328717
150
AP2S1_MOUSE
2-51
50
1
S:2-51
50
1.3b
ENSMUST00000086112
3b
ENSMUSE00000197995
chr7:
17332610-17332723
114
AP2S1_MOUSE
52-89
38
1
S:52-89
38
1.4
ENSMUST00000086112
4
ENSMUSE00000257379
chr7:
17334038-17334097
60
AP2S1_MOUSE
90-109
20
1
S:90-109
20
1.5a
ENSMUST00000086112
5a
ENSMUSE00000361197
chr7:
17334261-17334639
379
AP2S1_MOUSE
110-142
33
1
S:110-142
33
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2xa7S00 (S:1-142)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.60, no name defined]
(6)
Rat (Rattus norvegicus)
(2)
1a
2xa7S00
S:1-142
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Pfam Domains
(5, 5)
Info
all PFAM domains
1a: PFAM_Adap_comp_sub_2xa7M01 (M:159-446)
2a: PFAM_Clat_adaptor_s_2xa7S01 (S:1-142)
3a: PFAM_Clat_adaptor_s_2xa7M02 (M:1-135)
4a: PFAM_Adaptin_N_2xa7B01 (B:10-534)
5a: PFAM_Adaptin_N_2xa7A01 (A:29-591)
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Clan
:
Cargo_bd_muHD
(7)
Family
:
Adap_comp_sub
(7)
Rattus norvegicus (Rat)
(5)
1a
Adap_comp_sub-2xa7M01
M:159-446
Clan
:
SNARE
(6)
Family
:
Clat_adaptor_s
(5)
Mus musculus (Mouse)
(5)
2a
Clat_adaptor_s-2xa7S01
S:1-142
Rattus norvegicus (Rat)
(4)
3a
Clat_adaptor_s-2xa7M02
M:1-135
Clan
:
TPR
(230)
Family
:
Adaptin_N
(5)
Homo sapiens (Human)
(4)
4a
Adaptin_N-2xa7B01
B:10-534
Rattus norvegicus (Rat)
(3)
5a
Adaptin_N-2xa7A01
A:29-591
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Asym.Unit (617 KB)
Header - Asym.Unit
Biol.Unit 1 (605 KB)
Header - Biol.Unit 1
Biol.Unit 2 (603 KB)
Header - Biol.Unit 2
Biol.Unit 3 (8 KB)
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