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2X9V
Asym. Unit
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Asym.Unit (375 KB)
Biol.Unit 1 (367 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF TBPTR1 WITH TRIMETREXATE
Authors
:
A. Dawson, L. B. Tulloch, K. L. Barrack, W. N. Hunter
Date
:
24 Mar 10 (Deposition) - 23 Jun 10 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Short Chain Dehydrogenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dawson, L. B. Tulloch, K. L. Barrack, W. N. Hunter
High-Resolution Structures Of Trypanosoma Brucei Pteridine Reductase Ligand Complexes Inform On The Placement Of New Molecular Entities In The Active Site Of A Potential Drug Target
Acta Crystallogr. , Sect. D V. 66 1334 2010
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: TRIMETREXATE (TMQa)
3b: TRIMETREXATE (TMQb)
3c: TRIMETREXATE (TMQc)
3d: TRIMETREXATE (TMQd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3
TMQ
4
Ligand/Ion
TRIMETREXATE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:13 , ARG A:14 , ILE A:15 , TYR A:34 , HIS A:35 , ASN A:36 , SER A:37 , ALA A:61 , ASP A:62 , LEU A:63 , THR A:64 , ASN A:93 , ALA A:94 , SER A:95 , THR A:126 , LEU A:159 , CYS A:160 , TYR A:174 , LYS A:178 , PRO A:204 , GLY A:205 , VAL A:206 , SER A:207 , LEU A:208 , TMQ A:1270 , HOH A:2171 , HOH A:2225 , HOH A:2300 , HOH A:2302 , HOH A:2303 , HOH A:2304 , HOH A:2305 , HOH A:2306 , HOH A:2307 , HOH A:2308
BINDING SITE FOR RESIDUE NAP A1269
02
AC2
SOFTWARE
ARG B:14 , ILE B:15 , TYR B:34 , HIS B:35 , ASN B:36 , SER B:37 , ALA B:61 , ASP B:62 , LEU B:63 , THR B:64 , ASN B:93 , ALA B:94 , SER B:95 , THR B:126 , LEU B:159 , CYS B:160 , TYR B:174 , LYS B:178 , PRO B:204 , GLY B:205 , SER B:207 , LEU B:208 , TMQ B:1270 , HOH B:2178 , HOH B:2227 , HOH B:2310 , HOH B:2311 , HOH B:2313 , HOH B:2314 , HOH B:2316 , HOH B:2317 , HOH B:2318 , HOH B:2319
BINDING SITE FOR RESIDUE NAP B1269
03
AC3
SOFTWARE
ARG C:14 , ILE C:15 , TYR C:34 , HIS C:35 , ASN C:36 , SER C:37 , ALA C:61 , ASP C:62 , LEU C:63 , THR C:64 , ASN C:93 , ALA C:94 , SER C:95 , THR C:126 , LEU C:159 , CYS C:160 , ASP C:161 , TYR C:174 , LYS C:178 , PRO C:204 , GLY C:205 , VAL C:206 , SER C:207 , TMQ C:1270 , HOH C:2015 , HOH C:2156 , HOH C:2205 , HOH C:2270 , HOH C:2271 , HOH C:2272 , HOH C:2273 , HOH C:2276 , HOH C:2277 , HOH C:2278
BINDING SITE FOR RESIDUE NAP C1269
04
AC4
SOFTWARE
ARG D:14 , ILE D:15 , TYR D:34 , HIS D:35 , ASN D:36 , SER D:37 , ALA D:61 , ASP D:62 , LEU D:63 , THR D:64 , ASN D:93 , ALA D:94 , SER D:95 , THR D:126 , LEU D:159 , CYS D:160 , ASP D:161 , TYR D:174 , LYS D:178 , PRO D:204 , GLY D:205 , VAL D:206 , SER D:207 , TMQ D:1270 , HOH D:2154 , HOH D:2202 , HOH D:2269 , HOH D:2270 , HOH D:2271 , HOH D:2272 , HOH D:2273 , HOH D:2274 , HOH D:2275
BINDING SITE FOR RESIDUE NAP D1269
05
AC5
SOFTWARE
ARG A:14 , SER A:95 , PHE A:97 , ASP A:161 , CYS A:168 , TYR A:174 , LEU A:208 , PRO A:210 , MET A:213 , TRP A:221 , NAP A:1269 , HOH A:2309 , HOH A:2310
BINDING SITE FOR RESIDUE TMQ A1270
06
AC6
SOFTWARE
ARG B:14 , SER B:95 , PHE B:97 , CYS B:168 , TYR B:174 , LEU B:208 , PRO B:210 , NAP B:1269 , HOH B:2320
BINDING SITE FOR RESIDUE TMQ B1270
07
AC7
SOFTWARE
SER C:95 , PHE C:97 , ASP C:161 , TYR C:174 , LEU C:209 , PRO C:210 , MET C:213 , NAP C:1269 , HOH C:2279
BINDING SITE FOR RESIDUE TMQ C1270
08
AC8
SOFTWARE
SER D:95 , PHE D:97 , ASP D:161 , TYR D:174 , LEU D:209 , MET D:213 , NAP D:1269 , HOH D:2276
BINDING SITE FOR RESIDUE TMQ D1270
09
AC9
SOFTWARE
ALA B:212 , MET B:213 , GLY B:214 , GLU B:215 , HOH B:2246 , HOH B:2321 , HOH B:2322
BINDING SITE FOR RESIDUE ACT B1271
10
BC1
SOFTWARE
GLN C:186 , GLY C:254 , ILE C:256 , HOH C:2280 , HOH C:2281 , LYS D:258
BINDING SITE FOR RESIDUE ACT C1271
11
BC2
SOFTWARE
GLN A:186 , GLY A:254 , ILE A:256 , HOH A:2311 , HOH A:2312 , HOH A:2313 , LYS B:258 , HOH B:2299
BINDING SITE FOR RESIDUE ACT A1271
12
BC3
SOFTWARE
LYS A:258 , HOH A:2290 , GLN B:186 , GLY B:254 , ILE B:256 , HOH B:2323 , HOH B:2324 , HOH B:2325 , HOH B:2326
BINDING SITE FOR RESIDUE ACT B1272
13
BC4
SOFTWARE
LYS C:258 , GLN D:186 , GLY D:254 , ILE D:256 , HOH D:2278 , HOH D:2279 , HOH D:2280
BINDING SITE FOR RESIDUE ACT D1271
14
BC5
SOFTWARE
TYR B:34 , VAL B:58 , VAL C:57 , VAL C:58 , HOH C:2283
BINDING SITE FOR RESIDUE ACT C1272
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2x9va_ (A:)
1b: SCOP_d2x9vc_ (C:)
1c: SCOP_d2x9vd_ (D:)
1d: SCOP_d2x9vb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Trypanosoma brucei [TaxId: 5702]
(3)
1a
d2x9va_
A:
1b
d2x9vc_
C:
1c
d2x9vd_
D:
1d
d2x9vb_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2x9vC00 (C:2-268)
1b: CATH_2x9vD00 (D:2-268)
1c: CATH_2x9vB00 (B:2-268)
1d: CATH_2x9vA00 (A:2-268)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Trypanosoma brucei brucei. Organism_taxid: 5702.
(7)
1a
2x9vC00
C:2-268
1b
2x9vD00
D:2-268
1c
2x9vB00
B:2-268
1d
2x9vA00
A:2-268
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_C2_2x9vD01 (D:10-264)
1b: PFAM_adh_short_C2_2x9vD02 (D:10-264)
1c: PFAM_adh_short_C2_2x9vD03 (D:10-264)
1d: PFAM_adh_short_C2_2x9vD04 (D:10-264)
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)
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)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Trypanosoma brucei brucei
(6)
1a
adh_short_C2-2x9vD01
D:10-264
1b
adh_short_C2-2x9vD02
D:10-264
1c
adh_short_C2-2x9vD03
D:10-264
1d
adh_short_C2-2x9vD04
D:10-264
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