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2X9N
Asym. Unit
Info
Asym.Unit (383 KB)
Biol.Unit 1 (373 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF TBPTR1 IN COMPLEX WITH CYROMAZINE
Authors
:
A. Dawson, L. B. Tulloch, K. L. Barrack, W. N. Hunter
Date
:
23 Mar 10 (Deposition) - 30 Jun 10 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Short Chain Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dawson, L. B. Tulloch, K. L. Barrack, W. N. Hunter
High-Resolution Structures Of Trypanosoma Brucei Pteridine Reductase Ligand Complexes Inform On The Placement Of New Molecular Entities In The Active Site Of A Potential Drug Target
Acta Crystallogr. , Sect. D V. 66 1334 2010
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: N~2~-CYCLOPROPYL-1,3,5-TRIAZINE-2,... (AX3a)
2b: N~2~-CYCLOPROPYL-1,3,5-TRIAZINE-2,... (AX3b)
2c: N~2~-CYCLOPROPYL-1,3,5-TRIAZINE-2,... (AX3c)
2d: N~2~-CYCLOPROPYL-1,3,5-TRIAZINE-2,... (AX3d)
3a: (4S,5S)-1,2-DITHIANE-4,5-DIOL (D1Da)
3b: (4S,5S)-1,2-DITHIANE-4,5-DIOL (D1Db)
4a: DITHIANE DIOL (DTDa)
4b: DITHIANE DIOL (DTDb)
6a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
6b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
6c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
6d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
AX3
4
Ligand/Ion
N~2~-CYCLOPROPYL-1,3,5-TRIAZINE-2,4,6-TRIAMINE
3
D1D
2
Ligand/Ion
(4S,5S)-1,2-DITHIANE-4,5-DIOL
4
DTD
2
Ligand/Ion
DITHIANE DIOL
5
NA
2
Ligand/Ion
SODIUM ION
6
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:14 , ILE A:15 , TYR A:34 , HIS A:35 , ASN A:36 , SER A:37 , ALA A:61 , ASP A:62 , LEU A:63 , THR A:64 , ASN A:93 , ALA A:94 , SER A:95 , THR A:126 , LEU A:159 , CYS A:160 , TYR A:174 , LYS A:178 , PRO A:204 , GLY A:205 , SER A:207 , LEU A:208 , AX3 A:1270 , DTD A:1271 , HOH A:2090 , HOH A:2231 , HOH A:2283 , HOH A:2373 , HOH A:2374 , HOH A:2375 , HOH A:2378 , HOH A:2379 , HOH A:2380 , HOH A:2381
BINDING SITE FOR RESIDUE NAP A1269
02
AC2
SOFTWARE
ARG A:14 , SER A:95 , PHE A:97 , TYR A:174 , LEU A:208 , LEU A:209 , PRO A:210 , NAP A:1269 , DTD A:1271 , HOH A:2381
BINDING SITE FOR RESIDUE AX3 A1270
03
AC3
SOFTWARE
CYS A:168 , LEU A:209 , TRP A:221 , NAP A:1269 , AX3 A:1270 , HOH A:2264 , HOH A:2299 , HOH A:2382
BINDING SITE FOR RESIDUE DTD A1271
04
AC4
SOFTWARE
ARG B:14 , ILE B:15 , TYR B:34 , HIS B:35 , ASN B:36 , SER B:37 , ALA B:61 , ASP B:62 , LEU B:63 , THR B:64 , ASN B:93 , ALA B:94 , SER B:95 , THR B:126 , LEU B:159 , CYS B:160 , TYR B:174 , LYS B:178 , PRO B:204 , GLY B:205 , VAL B:206 , SER B:207 , LEU B:208 , AX3 B:1270 , D1D B:1271 , HOH B:2067 , HOH B:2179 , HOH B:2233 , HOH B:2313 , HOH B:2314 , HOH B:2315 , HOH B:2316 , HOH B:2317 , HOH B:2318 , HOH B:2319
BINDING SITE FOR RESIDUE NAP B1269
05
AC5
SOFTWARE
ARG B:14 , SER B:95 , PHE B:97 , TYR B:174 , LEU B:208 , LEU B:209 , PRO B:210 , NAP B:1269 , D1D B:1271 , HOH B:2180 , HOH B:2249
BINDING SITE FOR RESIDUE AX3 B1270
06
AC6
SOFTWARE
ASP B:161 , CYS B:168 , VAL B:206 , PRO B:210 , MET B:213 , TRP B:221 , NAP B:1269 , AX3 B:1270 , HOH B:2320 , HOH B:2321
BINDING SITE FOR RESIDUE D1D B1271
07
AC7
SOFTWARE
ARG C:14 , ILE C:15 , TYR C:34 , HIS C:35 , ASN C:36 , SER C:37 , ALA C:61 , ASP C:62 , LEU C:63 , THR C:64 , ASN C:93 , ALA C:94 , SER C:95 , THR C:126 , LEU C:159 , CYS C:160 , TYR C:174 , LYS C:178 , PRO C:204 , GLY C:205 , SER C:207 , LEU C:208 , AX3 C:1270 , DTD C:1271 , HOH C:2073 , HOH C:2203 , HOH C:2268 , HOH C:2347 , HOH C:2348 , HOH C:2349 , HOH C:2350 , HOH C:2351 , HOH C:2352 , HOH C:2353
BINDING SITE FOR RESIDUE NAP C1269
08
AC8
SOFTWARE
ARG C:14 , SER C:95 , PHE C:97 , TYR C:174 , LEU C:208 , LEU C:209 , PRO C:210 , NAP C:1269 , DTD C:1271 , HOH C:2206 , HOH C:2287
BINDING SITE FOR RESIDUE AX3 C1270
09
AC9
SOFTWARE
ASP C:161 , VAL C:206 , LEU C:209 , TRP C:221 , NAP C:1269 , AX3 C:1270 , HOH C:2251 , HOH C:2355
BINDING SITE FOR RESIDUE DTD C1271
10
BC1
SOFTWARE
LYS C:13 , ARG C:14 , ARG C:17 , HOH C:2017 , HOH C:2356
BINDING SITE FOR RESIDUE ACT C1272
11
BC2
SOFTWARE
ARG D:14 , ILE D:15 , TYR D:34 , HIS D:35 , ASN D:36 , SER D:37 , ALA D:61 , ASP D:62 , LEU D:63 , THR D:64 , ASN D:93 , ALA D:94 , SER D:95 , THR D:126 , LEU D:159 , CYS D:160 , TYR D:174 , LYS D:178 , PRO D:204 , GLY D:205 , SER D:207 , LEU D:208 , AX3 D:1270 , D1D D:1271 , HOH D:2013 , HOH D:2071 , HOH D:2184 , HOH D:2241 , HOH D:2318 , HOH D:2319 , HOH D:2320 , HOH D:2321 , HOH D:2323
BINDING SITE FOR RESIDUE NAP D1269
12
BC3
SOFTWARE
ARG D:14 , SER D:95 , PHE D:97 , TYR D:174 , LEU D:208 , LEU D:209 , PRO D:210 , NAP D:1269 , D1D D:1271 , HOH D:2188
BINDING SITE FOR RESIDUE AX3 D1270
13
BC4
SOFTWARE
ASP D:161 , CYS D:168 , VAL D:206 , PRO D:210 , MET D:213 , TRP D:221 , NAP D:1269 , AX3 D:1270 , HOH D:2224 , HOH D:2226
BINDING SITE FOR RESIDUE D1D D1271
14
BC5
SOFTWARE
ASN A:36 , HOH A:2093 , HOH A:2095 , HOH D:2034 , HOH D:2093 , HOH D:2096
BINDING SITE FOR RESIDUE NA A1272
15
BC6
SOFTWARE
HOH A:2136 , HOH A:2140 , HOH D:2129 , HOH D:2132 , HOH D:2136 , HOH D:2155
BINDING SITE FOR RESIDUE NA D1272
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2x9na_ (A:)
1b: SCOP_d2x9nb_ (B:)
1c: SCOP_d2x9nc_ (C:)
1d: SCOP_d2x9nd_ (D:)
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(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Trypanosoma brucei [TaxId: 5702]
(3)
1a
d2x9na_
A:
1b
d2x9nb_
B:
1c
d2x9nc_
C:
1d
d2x9nd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2x9nD00 (D:3-268)
1b: CATH_2x9nA00 (A:2-268)
1c: CATH_2x9nB00 (B:2-268)
1d: CATH_2x9nC00 (C:2-268)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Trypanosoma brucei brucei. Organism_taxid: 5702.
(7)
1a
2x9nD00
D:3-268
1b
2x9nA00
A:2-268
1c
2x9nB00
B:2-268
1d
2x9nC00
C:2-268
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_C2_2x9nD01 (D:10-264)
1b: PFAM_adh_short_C2_2x9nD02 (D:10-264)
1c: PFAM_adh_short_C2_2x9nD03 (D:10-264)
1d: PFAM_adh_short_C2_2x9nD04 (D:10-264)
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Clans
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)
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)
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)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Trypanosoma brucei brucei
(6)
1a
adh_short_C2-2x9nD01
D:10-264
1b
adh_short_C2-2x9nD02
D:10-264
1c
adh_short_C2-2x9nD03
D:10-264
1d
adh_short_C2-2x9nD04
D:10-264
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