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2X8H
Biol. Unit 1
Info
Asym.Unit (107 KB)
Biol.Unit 1 (200 KB)
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(1)
Title
:
THIOREDOXIN GLUTATHIONE REDUCTASE FROM SCHISTOSOMA MANSONI IN COMPLEX WITH GSH
Authors
:
F. Angelucci, D. Dimastrogiovanni, G. Boumis, M. Brunori, A. E. Miele, F. Saccoccia, A. Bellelli
Date
:
09 Mar 10 (Deposition) - 21 Jul 10 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Flavoprotein, Oxidoreductase, Nadph, Detoxification Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Angelucci, D. Dimastrogiovanni, G. Boumis, M. Brunori, A. E. Miele, F. Saccoccia, A. Bellelli
Mapping The Catalytic Cycle Of Schistosoma Mansoni Thioredoxin Glutathione Reductase By X-Ray Crystallography
J. Biol. Chem. V. 285 32557 2010
(for further references see the
PDB file header
)
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: CALCIUM ION (CAa)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
4a: GLUTATHIONE (GSHa)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
6a: TETRAETHYLENE GLYCOL (PG4a)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
GSH
2
Ligand/Ion
GLUTATHIONE
5
PEG
8
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:113 , GLY A:114 , GLY A:116 , SER A:117 , GLY A:118 , ASP A:137 , TYR A:138 , GLY A:152 , THR A:153 , CYS A:154 , VAL A:157 , GLY A:158 , CYS A:159 , LYS A:162 , ALA A:226 , GLY A:228 , ALA A:256 , THR A:257 , GLY A:258 , TYR A:296 , ARG A:393 , VAL A:400 , GLY A:432 , ASP A:433 , GLN A:440 , LEU A:441 , THR A:442 , PRO A:443 , HIS A:571 , HOH A:2053 , HOH A:2147 , HOH A:2255 , HOH A:2358 , HOH A:2359 , HOH A:2361 , HOH A:2362
BINDING SITE FOR RESIDUE FAD A1594
02
AC2
SOFTWARE
LYS A:25 , CYS A:28 , TYR A:30 , GLN A:60 , THR A:71 , VAL A:72 , PRO A:73 , ASP A:84 , SER A:85 , GLN A:86 , HOH A:2029
BINDING SITE FOR RESIDUE GSH A1595
03
AC3
SOFTWARE
PRO A:542 , ASN A:543 , GLU A:546 , CYS A:574
BINDING SITE FOR RESIDUE BME A1596
04
AC4
SOFTWARE
TYR A:138 , ASN A:225 , THR A:239 , ASP A:240 , GLN A:243 , HOH A:2064
BINDING SITE FOR RESIDUE PGE A1597
05
AC5
SOFTWARE
TRP A:10 , LYS A:13 , THR A:14 , ASP A:420 , TYR A:429 , LEU A:452 , ARG A:455 , ALA A:460 , HOH A:2363
BINDING SITE FOR RESIDUE PGE A1598
06
AC6
SOFTWARE
SER A:318 , LEU A:320 , GLN A:326 , ALA A:329 , GLU A:330 , GLY A:333 , ASP A:334 , GLU A:337 , PHE A:343 , LYS A:345 , HOH A:2364
BINDING SITE FOR RESIDUE PG4 A1599
07
AC7
SOFTWARE
PHE A:564 , ASP A:565 , THR A:567 , THR A:579 , HOH A:2266
BINDING SITE FOR RESIDUE CA A1600
08
AC8
SOFTWARE
GLU A:140 , PRO A:141 , ARG A:260 , GLN A:396 , HOH A:2365
BINDING SITE FOR RESIDUE PEG A1601
09
AC9
SOFTWARE
GLU A:462 , LEU A:463
BINDING SITE FOR RESIDUE PEG A1602
10
BC1
SOFTWARE
SER A:65 , PHE A:66 , LYS A:68
BINDING SITE FOR RESIDUE PEG A1603
11
BC2
SOFTWARE
TYR A:272 , TYR A:284 , GLN A:354 , LYS A:356 , VAL A:358 , LEU A:368
BINDING SITE FOR RESIDUE PEG A1604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Pyr_redox_2x8hA01 (A:288-365)
2a: PFAM_Pyr_redox_2_2x8hA02 (A:109-439)
3a: PFAM_Glutaredoxin_2x8hA03 (A:20-82)
4a: PFAM_Pyr_redox_dim_2x8hA04 (A:469-582)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Schistosoma mansoni (Blood fluke)
(4)
1a
Pyr_redox-2x8hA01
A:288-365
Family
:
Pyr_redox_2
(69)
Schistosoma mansoni (Blood fluke)
(4)
2a
Pyr_redox_2-2x8hA02
A:109-439
Clan
:
Thioredoxin
(367)
Family
:
Glutaredoxin
(22)
Schistosoma mansoni (Blood fluke)
(4)
3a
Glutaredoxin-2x8hA03
A:20-82
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Schistosoma mansoni (Blood fluke)
(4)
4a
Pyr_redox_dim-2x8hA04
A:469-582
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