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2X88
Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HOLOCOTA
Authors
:
I. Bento, C. S. Silva, Z. Chen, L. O. Martins, P. F. Lindley, C. M. Soares
Date
:
06 Mar 10 (Deposition) - 22 Sep 10 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Oxidase, Laccase, Sporulation, Oxygen Reduction, Multicopper-Oxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bento, C. S. Silva, Z. Chen, L. O. Martins, P. F. Lindley, C. M. Soares
Mechanisms Underlying Dioxygen Reduction In Laccases. Structural And Modelling Studies Focusing On Proton Transfer.
Bmc Struct. Biol. V. 10 29 2010
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3a: OXYGEN MOLECULE (OXYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
5
Ligand/Ion
COPPER (II) ION
2
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
OXY
1
Ligand/Ion
OXYGEN MOLECULE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:419 , CYS A:492 , HIS A:497 , MET A:502
BINDING SITE FOR RESIDUE CU A 1512
2
AC2
SOFTWARE
HIS A:107 , HIS A:153 , HIS A:493 , OXY A:1516
BINDING SITE FOR RESIDUE CU A 1513
3
AC3
SOFTWARE
HIS A:155 , HIS A:424 , HIS A:491 , OXY A:1516
BINDING SITE FOR RESIDUE CU A 1514
4
AC4
SOFTWARE
HIS A:105 , HIS A:107 , HIS A:422 , HIS A:424 , OXY A:1516 , HOH A:2151
BINDING SITE FOR RESIDUE CU A 1515
5
AC5
SOFTWARE
HIS A:105 , HIS A:107 , HIS A:153 , HIS A:155 , HIS A:422 , HIS A:424 , HIS A:491 , HIS A:493 , CU A:1513 , CU A:1514 , CU A:1515 , HOH A:2525
BINDING SITE FOR RESIDUE OXY A 1516
6
AC6
SOFTWARE
HIS A:86 , HIS A:89 , HOH A:2132 , HOH A:2144
BINDING SITE FOR RESIDUE CU A 1517
7
AC7
SOFTWARE
ALA A:317 , PRO A:328 , ALA A:332 , ASN A:333 , HOH A:2358
BINDING SITE FOR RESIDUE MPD A 1518
8
AC8
SOFTWARE
TYR A:354 , LEU A:355 , SER A:357 , THR A:377 , HOH A:2529
BINDING SITE FOR RESIDUE MPD A 1519
9
AC9
SOFTWARE
PRO A:132 , TYR A:133
BINDING SITE FOR RESIDUE MPD A 1520
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2x88a1 (A:2-182)
1b: SCOP_d2x88a2 (A:183-356)
1c: SCOP_d2x88a3 (A:357-511)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Spore coat protein A, CotA
(9)
Bacillus subtilis [TaxId: 1423]
(9)
1a
d2x88a1
A:2-182
1b
d2x88a2
A:183-356
1c
d2x88a3
A:357-511
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_2x88A01 (A:175-340)
2a: PFAM_Cu_oxidase_2_2x88A02 (A:358-511)
3a: PFAM_Cu_oxidase_3_2x88A03 (A:96-179)
3b: PFAM_Cu_oxidase_3_2x88A04 (A:96-179)
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Clans
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(
)
Families
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(
)
Organisms
(
)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Bacillus subtilis
(7)
1a
Cu-oxidase-2x88A01
A:175-340
Family
:
Cu-oxidase_2
(24)
Bacillus subtilis
(7)
2a
Cu-oxidase_2-2x88A02
A:358-511
Family
:
Cu-oxidase_3
(79)
Bacillus subtilis
(7)
3a
Cu-oxidase_3-2x88A03
A:96-179
3b
Cu-oxidase_3-2x88A04
A:96-179
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Chain A
Asymmetric Unit 1
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