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2X86
Asym. Unit
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Asym.Unit (1.0 MB)
Biol.Unit 1 (268 KB)
Biol.Unit 2 (268 KB)
Biol.Unit 3 (267 KB)
Biol.Unit 4 (266 KB)
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(1)
Title
:
AGME BOUND TO ADP-B-MANNOSE
Authors
:
T. Kowatz, J. P. Morrison, M. E. Tanner, J. H. Naismith
Date
:
06 Mar 10 (Deposition) - 16 Mar 10 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: K,L,M,N,O (1x)
Biol. Unit 4: P,Q,R,S,T (1x)
Keywords
:
Lipopolysaccharide Biosynthesis, Carbohydrate Metabolism, Isomerase, Stress Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kowatz, J. P. Morrison, M. E. Tanner, J. H. Naismith
The Crystal Structure Of The Y140F Mutant Of Adp-L-Glycero-D-Manno-Heptose 6-Epimerase Bound To Adp-Beta-D-Mannose Suggests A One Base Mechanism.
Protein Sci. V. 19 1337 2010
[
close entry info
]
Hetero Components
(3, 59)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
1l: ADENOSINE-5'-DIPHOSPHATE (ADPl)
1m: ADENOSINE-5'-DIPHOSPHATE (ADPm)
1n: ADENOSINE-5'-DIPHOSPHATE (ADPn)
1o: ADENOSINE-5'-DIPHOSPHATE (ADPo)
1p: ADENOSINE-5'-DIPHOSPHATE (ADPp)
1q: ADENOSINE-5'-DIPHOSPHATE (ADPq)
1r: ADENOSINE-5'-DIPHOSPHATE (ADPr)
1s: ADENOSINE-5'-DIPHOSPHATE (ADPs)
1t: ADENOSINE-5'-DIPHOSPHATE (ADPt)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
2g: BETA-D-MANNOSE (BMAg)
2h: BETA-D-MANNOSE (BMAh)
2i: BETA-D-MANNOSE (BMAi)
2j: BETA-D-MANNOSE (BMAj)
2k: BETA-D-MANNOSE (BMAk)
2l: BETA-D-MANNOSE (BMAl)
2m: BETA-D-MANNOSE (BMAm)
2n: BETA-D-MANNOSE (BMAn)
2o: BETA-D-MANNOSE (BMAo)
2p: BETA-D-MANNOSE (BMAp)
2q: BETA-D-MANNOSE (BMAq)
2r: BETA-D-MANNOSE (BMAr)
2s: BETA-D-MANNOSE (BMAs)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
3d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
3f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
3h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
3i: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPi)
3j: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPj)
3k: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPk)
3l: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPl)
3m: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPm)
3n: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPn)
3o: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPo)
3p: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPp)
3q: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPq)
3r: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPr)
3s: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPs)
3t: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
20
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BMA
19
Ligand/Ion
BETA-D-MANNOSE
3
NAP
20
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(59, 59)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:6 , GLY A:9 , PHE A:10 , ILE A:11 , ASP A:31 , ASN A:32 , LYS A:38 , LYS A:53 , GLU A:75 , GLY A:76 , ALA A:77 , CYS A:78 , SER A:79 , TYR A:88 , ASN A:92 , TYR A:96 , ALA A:114 , SER A:115 , SER A:116 , PHE A:140 , LYS A:144 , TYR A:167 , PHE A:168 , VAL A:170 , HIS A:177 , LYS A:178 , BMA A:402 , HOH A:2001 , HOH A:2058
BINDING SITE FOR RESIDUE NAP A 400
02
AC2
SOFTWARE
THR A:81 , ASN A:169 , SER A:180 , MET A:181 , ALA A:182 , VAL A:184 , HIS A:187 , LEU A:200 , PHE A:201 , SER A:204 , ARG A:209 , PHE A:243 , LEU A:268 , TYR A:272 , BMA A:402 , HOH A:2059
BINDING SITE FOR RESIDUE ADP A 401
03
AC3
SOFTWARE
SER A:79 , THR A:81 , SER A:116 , PHE A:140 , LYS A:178 , MET A:181 , NAP A:400 , ADP A:401
BINDING SITE FOR RESIDUE BMA A 402
04
AC4
SOFTWARE
GLY B:6 , GLY B:9 , PHE B:10 , ILE B:11 , ASP B:31 , ASN B:32 , LYS B:38 , LYS B:53 , GLU B:75 , GLY B:76 , ALA B:77 , CYS B:78 , SER B:79 , TYR B:88 , ASN B:92 , TYR B:96 , ALA B:114 , SER B:116 , PHE B:140 , LYS B:144 , TYR B:167 , PHE B:168 , ASN B:169 , VAL B:170 , HIS B:177 , LYS B:178 , HOH B:2002 , HOH B:2036
BINDING SITE FOR RESIDUE NAP B 400
05
AC5
SOFTWARE
THR B:81 , ASN B:169 , SER B:180 , MET B:181 , ALA B:182 , VAL B:184 , HIS B:187 , LEU B:200 , PHE B:201 , SER B:204 , ARG B:209 , LEU B:268 , TYR B:272
BINDING SITE FOR RESIDUE ADP B 401
06
AC6
SOFTWARE
GLY C:6 , GLY C:9 , PHE C:10 , ILE C:11 , ASP C:31 , ASN C:32 , LYS C:38 , LYS C:53 , GLU C:75 , GLY C:76 , ALA C:77 , CYS C:78 , SER C:79 , TYR C:88 , ASN C:92 , TYR C:96 , ALA C:114 , SER C:115 , PHE C:140 , LYS C:144 , TYR C:167 , PHE C:168 , VAL C:170 , HIS C:177 , LYS C:178 , BMA C:402
BINDING SITE FOR RESIDUE NAP C 400
07
AC7
SOFTWARE
THR C:81 , ASN C:169 , SER C:180 , MET C:181 , ALA C:182 , HIS C:187 , LEU C:200 , PHE C:201 , SER C:204 , ARG C:209 , PHE C:243 , LEU C:268 , TYR C:272 , BMA C:402
BINDING SITE FOR RESIDUE ADP C 401
08
AC8
SOFTWARE
SER C:79 , SER C:116 , PHE C:140 , LYS C:178 , MET C:181 , NAP C:400 , ADP C:401
BINDING SITE FOR RESIDUE BMA C 402
09
AC9
SOFTWARE
GLY D:6 , GLY D:9 , PHE D:10 , ILE D:11 , ASP D:31 , ASN D:32 , LYS D:38 , LYS D:53 , GLU D:75 , GLY D:76 , ALA D:77 , CYS D:78 , SER D:79 , TYR D:88 , ASN D:92 , TYR D:96 , ALA D:114 , SER D:115 , SER D:116 , PHE D:140 , LYS D:144 , TYR D:167 , PHE D:168 , VAL D:170 , HIS D:177 , LYS D:178 , BMA D:402 , HOH D:2002 , HOH D:2060
BINDING SITE FOR RESIDUE NAP D 400
10
BC1
SOFTWARE
THR D:81 , ASN D:169 , SER D:180 , MET D:181 , ALA D:182 , VAL D:184 , HIS D:187 , LEU D:200 , PHE D:201 , SER D:204 , ARG D:209 , PHE D:243 , LEU D:268 , TYR D:272 , BMA D:402
BINDING SITE FOR RESIDUE ADP D 401
11
BC2
SOFTWARE
SER D:79 , SER D:116 , PHE D:140 , LYS D:178 , MET D:181 , NAP D:400 , ADP D:401
BINDING SITE FOR RESIDUE BMA D 402
12
BC3
SOFTWARE
GLY E:6 , GLY E:9 , PHE E:10 , ILE E:11 , ASP E:31 , ASN E:32 , LYS E:38 , LYS E:53 , GLU E:75 , GLY E:76 , ALA E:77 , CYS E:78 , SER E:79 , TYR E:88 , ASN E:92 , TYR E:96 , ALA E:114 , SER E:115 , SER E:116 , PHE E:140 , LYS E:144 , TYR E:167 , PHE E:168 , VAL E:170 , HIS E:177 , LYS E:178 , BMA E:402 , HOH E:2002
BINDING SITE FOR RESIDUE NAP E 400
13
BC4
SOFTWARE
THR E:81 , ASN E:169 , SER E:180 , MET E:181 , ALA E:182 , VAL E:184 , HIS E:187 , LEU E:200 , PHE E:201 , SER E:204 , ARG E:209 , PHE E:243 , LEU E:268 , TYR E:272 , BMA E:402 , HOH E:2061
BINDING SITE FOR RESIDUE ADP E 401
14
BC5
SOFTWARE
SER E:79 , SER E:116 , PHE E:140 , LYS E:178 , MET E:181 , NAP E:400 , ADP E:401
BINDING SITE FOR RESIDUE BMA E 402
15
BC6
SOFTWARE
GLY F:6 , GLY F:9 , PHE F:10 , ILE F:11 , VAL F:30 , ASP F:31 , ASN F:32 , LYS F:38 , LYS F:53 , GLU F:75 , GLY F:76 , ALA F:77 , CYS F:78 , SER F:79 , TYR F:88 , ASN F:92 , TYR F:96 , ALA F:114 , SER F:115 , SER F:116 , PHE F:140 , LYS F:144 , TYR F:167 , PHE F:168 , VAL F:170 , HIS F:177 , LYS F:178 , BMA F:402 , HOH F:2054 , HOH F:2055 , HOH F:2056
BINDING SITE FOR RESIDUE NAP F 400
16
BC7
SOFTWARE
THR F:81 , ASN F:169 , SER F:180 , ALA F:182 , VAL F:184 , HIS F:187 , LEU F:200 , PHE F:201 , SER F:204 , ARG F:209 , PHE F:243 , LEU F:268 , TYR F:272 , BMA F:402
BINDING SITE FOR RESIDUE ADP F 401
17
BC8
SOFTWARE
SER F:79 , SER F:116 , ALA F:118 , PHE F:140 , LYS F:178 , MET F:181 , NAP F:400 , ADP F:401
BINDING SITE FOR RESIDUE BMA F 402
18
BC9
SOFTWARE
GLY G:6 , GLY G:9 , PHE G:10 , ILE G:11 , ASP G:31 , ASN G:32 , LYS G:38 , LYS G:53 , GLU G:75 , GLY G:76 , ALA G:77 , CYS G:78 , SER G:79 , TYR G:88 , ASN G:92 , TYR G:96 , ALA G:114 , SER G:115 , SER G:116 , PHE G:140 , LYS G:144 , TYR G:167 , PHE G:168 , VAL G:170 , HIS G:177 , LYS G:178 , BMA G:402
BINDING SITE FOR RESIDUE NAP G 400
19
CC1
SOFTWARE
THR G:81 , ASN G:169 , SER G:180 , MET G:181 , ALA G:182 , VAL G:184 , HIS G:187 , LEU G:200 , PHE G:201 , SER G:204 , ARG G:209 , PHE G:243 , LEU G:268 , TYR G:272 , BMA G:402
BINDING SITE FOR RESIDUE ADP G 401
20
CC2
SOFTWARE
SER G:79 , SER G:116 , ALA G:118 , PHE G:140 , LYS G:178 , MET G:181 , NAP G:400 , ADP G:401
BINDING SITE FOR RESIDUE BMA G 402
21
CC3
SOFTWARE
THR H:5 , GLY H:6 , GLY H:9 , PHE H:10 , ILE H:11 , ASP H:31 , ASN H:32 , LYS H:38 , LYS H:53 , GLU H:75 , GLY H:76 , ALA H:77 , SER H:79 , TYR H:88 , ASN H:92 , TYR H:96 , ALA H:114 , SER H:115 , SER H:116 , PHE H:140 , LYS H:144 , TYR H:167 , PHE H:168 , VAL H:170 , HIS H:177 , LYS H:178 , BMA H:402
BINDING SITE FOR RESIDUE NAP H 400
22
CC4
SOFTWARE
THR H:81 , ASN H:169 , SER H:180 , ALA H:182 , HIS H:187 , LEU H:200 , PHE H:201 , SER H:204 , ARG H:209 , PHE H:243 , TYR H:272 , BMA H:402 , HOH H:2049
BINDING SITE FOR RESIDUE ADP H 401
23
CC5
SOFTWARE
SER H:79 , SER H:116 , PHE H:140 , LYS H:178 , MET H:181 , NAP H:400 , ADP H:401
BINDING SITE FOR RESIDUE BMA H 402
24
CC6
SOFTWARE
GLY I:6 , GLY I:9 , PHE I:10 , ILE I:11 , ASP I:31 , ASN I:32 , LYS I:38 , LYS I:53 , GLU I:75 , GLY I:76 , ALA I:77 , CYS I:78 , SER I:79 , TYR I:88 , ASN I:92 , TYR I:96 , ALA I:114 , SER I:115 , SER I:116 , PHE I:140 , LYS I:144 , TYR I:167 , PHE I:168 , VAL I:170 , HIS I:177 , LYS I:178 , BMA I:402 , HOH I:2001 , HOH I:2077
BINDING SITE FOR RESIDUE NAP I 400
25
CC7
SOFTWARE
THR I:81 , ASN I:169 , SER I:180 , MET I:181 , ALA I:182 , VAL I:184 , HIS I:187 , LEU I:200 , PHE I:201 , SER I:204 , ARG I:209 , PHE I:243 , LEU I:268 , TYR I:272 , BMA I:402 , HOH I:2078
BINDING SITE FOR RESIDUE ADP I 401
26
CC8
SOFTWARE
SER I:79 , SER I:116 , PHE I:140 , LYS I:178 , MET I:181 , NAP I:400 , ADP I:401 , HOH I:2078
BINDING SITE FOR RESIDUE BMA I 402
27
CC9
SOFTWARE
GLY J:6 , GLY J:9 , PHE J:10 , ILE J:11 , ASP J:31 , ASN J:32 , LYS J:38 , LYS J:53 , GLU J:75 , GLY J:76 , ALA J:77 , CYS J:78 , SER J:79 , TYR J:88 , ASN J:92 , TYR J:96 , ALA J:114 , SER J:115 , SER J:116 , PHE J:140 , LYS J:144 , TYR J:167 , PHE J:168 , VAL J:170 , HIS J:177 , LYS J:178 , BMA J:402 , HOH J:2065 , HOH J:2066
BINDING SITE FOR RESIDUE NAP J 400
28
DC1
SOFTWARE
THR J:81 , ASN J:169 , SER J:180 , MET J:181 , ALA J:182 , VAL J:184 , HIS J:187 , LEU J:200 , PHE J:201 , SER J:204 , ARG J:209 , PHE J:243 , TYR J:272 , BMA J:402
BINDING SITE FOR RESIDUE ADP J 401
29
DC2
SOFTWARE
SER J:79 , SER J:116 , PHE J:140 , PHE J:168 , LYS J:178 , MET J:181 , NAP J:400 , ADP J:401
BINDING SITE FOR RESIDUE BMA J 402
30
DC3
SOFTWARE
GLY K:6 , GLY K:9 , PHE K:10 , ILE K:11 , ASP K:31 , ASN K:32 , LYS K:38 , LYS K:53 , GLU K:75 , GLY K:76 , ALA K:77 , CYS K:78 , SER K:79 , TYR K:88 , ASN K:92 , TYR K:96 , ALA K:114 , SER K:115 , SER K:116 , PHE K:140 , LYS K:144 , TYR K:167 , PHE K:168 , VAL K:170 , HIS K:177 , LYS K:178 , BMA K:402 , HOH K:2059
BINDING SITE FOR RESIDUE NAP K 400
31
DC4
SOFTWARE
THR K:81 , ASN K:169 , SER K:180 , MET K:181 , ALA K:182 , HIS K:187 , LEU K:200 , PHE K:201 , SER K:204 , PHE K:207 , ARG K:209 , PHE K:243 , TYR K:272 , BMA K:402
BINDING SITE FOR RESIDUE ADP K 401
32
DC5
SOFTWARE
SER K:79 , SER K:116 , PHE K:140 , LYS K:178 , MET K:181 , NAP K:400 , ADP K:401
BINDING SITE FOR RESIDUE BMA K 402
33
DC6
SOFTWARE
GLY L:6 , GLY L:9 , PHE L:10 , ILE L:11 , ASP L:31 , ASN L:32 , LYS L:38 , LYS L:53 , GLU L:75 , GLY L:76 , ALA L:77 , SER L:79 , TYR L:88 , ASN L:92 , TYR L:96 , ALA L:114 , SER L:115 , SER L:116 , PHE L:140 , LYS L:144 , TYR L:167 , PHE L:168 , VAL L:170 , HIS L:177 , LYS L:178 , BMA L:402 , HOH L:2050
BINDING SITE FOR RESIDUE NAP L 400
34
DC7
SOFTWARE
THR L:81 , ASN L:169 , SER L:180 , MET L:181 , ALA L:182 , VAL L:184 , HIS L:187 , LEU L:200 , PHE L:201 , SER L:204 , ARG L:209 , PHE L:243 , TYR L:272 , BMA L:402
BINDING SITE FOR RESIDUE ADP L 401
35
DC8
SOFTWARE
SER L:79 , SER L:116 , PHE L:140 , LYS L:178 , MET L:181 , NAP L:400 , ADP L:401
BINDING SITE FOR RESIDUE BMA L 402
36
DC9
SOFTWARE
GLY M:6 , GLY M:9 , PHE M:10 , ILE M:11 , ASP M:31 , ASN M:32 , LYS M:38 , LYS M:53 , GLU M:75 , GLY M:76 , ALA M:77 , CYS M:78 , SER M:79 , TYR M:88 , ASN M:92 , TYR M:96 , ALA M:114 , SER M:115 , SER M:116 , PHE M:140 , LYS M:144 , TYR M:167 , PHE M:168 , VAL M:170 , HIS M:177 , LYS M:178 , BMA M:402 , HOH M:2044 , HOH M:2045
BINDING SITE FOR RESIDUE NAP M 400
37
EC1
SOFTWARE
THR M:81 , ASN M:169 , SER M:180 , ALA M:182 , HIS M:187 , LEU M:200 , PHE M:201 , SER M:204 , ARG M:209 , PHE M:243 , TYR M:272 , BMA M:402
BINDING SITE FOR RESIDUE ADP M 401
38
EC2
SOFTWARE
SER M:79 , SER M:116 , LYS M:178 , MET M:181 , NAP M:400 , ADP M:401
BINDING SITE FOR RESIDUE BMA M 402
39
EC3
SOFTWARE
GLY N:6 , GLY N:9 , PHE N:10 , ILE N:11 , ASP N:31 , ASN N:32 , LYS N:38 , LYS N:53 , GLU N:75 , GLY N:76 , ALA N:77 , CYS N:78 , SER N:79 , TYR N:88 , ASN N:92 , TYR N:96 , ALA N:114 , SER N:115 , SER N:116 , PHE N:140 , LYS N:144 , PHE N:168 , VAL N:170 , HIS N:177 , LYS N:178 , BMA N:402 , HOH N:2038 , HOH N:2039
BINDING SITE FOR RESIDUE NAP N 400
40
EC4
SOFTWARE
THR N:81 , ASN N:169 , SER N:180 , MET N:181 , ALA N:182 , VAL N:184 , HIS N:187 , LEU N:200 , PHE N:201 , SER N:204 , ARG N:209 , PHE N:243 , TYR N:272 , BMA N:402
BINDING SITE FOR RESIDUE ADP N 401
41
EC5
SOFTWARE
SER N:79 , SER N:116 , PHE N:140 , LYS N:178 , MET N:181 , NAP N:400 , ADP N:401
BINDING SITE FOR RESIDUE BMA N 402
42
EC6
SOFTWARE
GLY O:6 , GLY O:9 , PHE O:10 , ILE O:11 , ASP O:31 , ASN O:32 , LYS O:38 , LYS O:53 , GLU O:75 , GLY O:76 , ALA O:77 , CYS O:78 , SER O:79 , TYR O:88 , ASN O:92 , TYR O:96 , ALA O:114 , SER O:115 , PHE O:140 , LYS O:144 , TYR O:167 , PHE O:168 , VAL O:170 , HIS O:177 , LYS O:178 , BMA O:402
BINDING SITE FOR RESIDUE NAP O 400
43
EC7
SOFTWARE
THR O:81 , ASN O:169 , SER O:180 , MET O:181 , ALA O:182 , VAL O:184 , HIS O:187 , LEU O:200 , PHE O:201 , SER O:204 , PHE O:207 , ARG O:209 , PHE O:243 , TYR O:272 , BMA O:402
BINDING SITE FOR RESIDUE ADP O 401
44
EC8
SOFTWARE
SER O:79 , SER O:116 , PHE O:140 , LYS O:178 , MET O:181 , NAP O:400 , ADP O:401
BINDING SITE FOR RESIDUE BMA O 402
45
EC9
SOFTWARE
GLY P:6 , GLY P:9 , PHE P:10 , ILE P:11 , ASP P:31 , ASN P:32 , LYS P:38 , LYS P:53 , GLU P:75 , GLY P:76 , ALA P:77 , SER P:79 , TYR P:88 , ASN P:92 , TYR P:96 , ALA P:114 , SER P:115 , SER P:116 , PHE P:140 , LYS P:144 , TYR P:167 , PHE P:168 , VAL P:170 , HIS P:177 , LYS P:178 , BMA P:402 , HOH P:2001 , HOH P:2012
BINDING SITE FOR RESIDUE NAP P 400
46
FC1
SOFTWARE
THR P:81 , ASN P:169 , SER P:180 , ALA P:182 , VAL P:184 , HIS P:187 , LEU P:200 , PHE P:201 , SER P:204 , ARG P:209 , PHE P:243 , LEU P:268 , TYR P:272 , BMA P:402
BINDING SITE FOR RESIDUE ADP P 401
47
FC2
SOFTWARE
SER P:79 , SER P:116 , PHE P:140 , LYS P:178 , MET P:181 , NAP P:400 , ADP P:401
BINDING SITE FOR RESIDUE BMA P 402
48
FC3
SOFTWARE
GLY Q:6 , GLY Q:9 , PHE Q:10 , ILE Q:11 , ASP Q:31 , ASN Q:32 , LYS Q:38 , LYS Q:53 , GLU Q:75 , GLY Q:76 , ALA Q:77 , CYS Q:78 , SER Q:79 , TYR Q:88 , ASN Q:92 , TYR Q:96 , ALA Q:114 , SER Q:115 , SER Q:116 , PHE Q:140 , LYS Q:144 , TYR Q:167 , PHE Q:168 , VAL Q:170 , HIS Q:177 , LYS Q:178 , BMA Q:402 , HOH Q:2007 , HOH Q:2050
BINDING SITE FOR RESIDUE NAP Q 400
49
FC4
SOFTWARE
THR Q:81 , ASN Q:169 , SER Q:180 , MET Q:181 , ALA Q:182 , VAL Q:184 , HIS Q:187 , LEU Q:200 , PHE Q:201 , SER Q:204 , ARG Q:209 , PHE Q:243 , LEU Q:268 , TYR Q:272 , BMA Q:402
BINDING SITE FOR RESIDUE ADP Q 401
50
FC5
SOFTWARE
SER Q:79 , SER Q:116 , PHE Q:140 , LYS Q:178 , MET Q:181 , NAP Q:400 , ADP Q:401
BINDING SITE FOR RESIDUE BMA Q 402
51
FC6
SOFTWARE
GLY R:6 , GLY R:9 , PHE R:10 , ILE R:11 , ASP R:31 , ASN R:32 , LYS R:38 , LYS R:53 , GLU R:75 , GLY R:76 , ALA R:77 , CYS R:78 , SER R:79 , TYR R:88 , ASN R:92 , TYR R:96 , ALA R:114 , SER R:115 , SER R:116 , PHE R:140 , LYS R:144 , TYR R:167 , PHE R:168 , VAL R:170 , HIS R:177 , LYS R:178 , BMA R:402
BINDING SITE FOR RESIDUE NAP R 400
52
FC7
SOFTWARE
THR R:81 , ASN R:169 , SER R:180 , MET R:181 , ALA R:182 , HIS R:187 , LEU R:200 , PHE R:201 , SER R:204 , ARG R:209 , PHE R:243 , LEU R:268 , TYR R:272 , BMA R:402
BINDING SITE FOR RESIDUE ADP R 401
53
FC8
SOFTWARE
SER R:79 , SER R:116 , PHE R:140 , LYS R:178 , MET R:181 , NAP R:400 , ADP R:401
BINDING SITE FOR RESIDUE BMA R 402
54
FC9
SOFTWARE
GLY S:6 , GLY S:9 , PHE S:10 , ILE S:11 , ASP S:31 , ASN S:32 , LYS S:38 , LYS S:53 , GLU S:75 , GLY S:76 , ALA S:77 , CYS S:78 , SER S:79 , TYR S:88 , ASN S:92 , TYR S:96 , ALA S:114 , SER S:115 , SER S:116 , PHE S:140 , LYS S:144 , TYR S:167 , PHE S:168 , VAL S:170 , HIS S:177 , LYS S:178 , BMA S:402 , HOH S:2020
BINDING SITE FOR RESIDUE NAP S 400
55
GC1
SOFTWARE
THR S:81 , ASN S:169 , SER S:180 , MET S:181 , ALA S:182 , VAL S:184 , HIS S:187 , LEU S:200 , PHE S:201 , SER S:204 , ARG S:209 , PHE S:243 , TYR S:272 , BMA S:402
BINDING SITE FOR RESIDUE ADP S 401
56
GC2
SOFTWARE
SER S:79 , SER S:116 , PHE S:140 , LYS S:178 , MET S:181 , NAP S:400 , ADP S:401
BINDING SITE FOR RESIDUE BMA S 402
57
GC3
SOFTWARE
GLY T:6 , GLY T:9 , PHE T:10 , ILE T:11 , VAL T:30 , ASP T:31 , ASN T:32 , LYS T:38 , LYS T:53 , GLU T:75 , GLY T:76 , ALA T:77 , SER T:79 , TYR T:88 , ASN T:92 , TYR T:96 , ALA T:114 , SER T:115 , SER T:116 , PHE T:140 , LYS T:144 , TYR T:167 , PHE T:168 , VAL T:170 , HIS T:177 , LYS T:178 , BMA T:402 , HOH T:2001
BINDING SITE FOR RESIDUE NAP T 400
58
GC4
SOFTWARE
THR T:81 , ASN T:169 , SER T:180 , MET T:181 , ALA T:182 , VAL T:184 , HIS T:187 , LEU T:200 , PHE T:201 , SER T:204 , ARG T:209 , PHE T:243 , LEU T:268 , TYR T:272 , BMA T:402
BINDING SITE FOR RESIDUE ADP T 401
59
GC5
SOFTWARE
SER T:79 , SER T:116 , PHE T:140 , LYS T:178 , MET T:181 , NAP T:400 , ADP T:401
BINDING SITE FOR RESIDUE BMA T 402
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d2x86a_ (A:)
1b: SCOP_d2x86b_ (B:)
1c: SCOP_d2x86c_ (C:)
1d: SCOP_d2x86d_ (D:)
1e: SCOP_d2x86e_ (E:)
1f: SCOP_d2x86f_ (F:)
1g: SCOP_d2x86g_ (G:)
1h: SCOP_d2x86h_ (H:)
1i: SCOP_d2x86i_ (I:)
1j: SCOP_d2x86j_ (J:)
1k: SCOP_d2x86k_ (K:)
1l: SCOP_d2x86l_ (L:)
1m: SCOP_d2x86m_ (M:)
1n: SCOP_d2x86n_ (N:)
1o: SCOP_d2x86o_ (O:)
1p: SCOP_d2x86p_ (P:)
1q: SCOP_d2x86q_ (Q:)
1r: SCOP_d2x86r_ (R:)
1s: SCOP_d2x86s_ (S:)
1t: SCOP_d2x86t_ (T:)
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Escherichia coli [TaxId: 562]
(2)
1a
d2x86a_
A:
1b
d2x86b_
B:
1c
d2x86c_
C:
1d
d2x86d_
D:
1e
d2x86e_
E:
1f
d2x86f_
F:
1g
d2x86g_
G:
1h
d2x86h_
H:
1i
d2x86i_
I:
1j
d2x86j_
J:
1k
d2x86k_
K:
1l
d2x86l_
L:
1m
d2x86m_
M:
1n
d2x86n_
N:
1o
d2x86o_
O:
1p
d2x86p_
P:
1q
d2x86q_
Q:
1r
d2x86r_
R:
1s
d2x86s_
S:
1t
d2x86t_
T:
[
close SCOP info
]
CATH Domains
(2, 40)
Info
all CATH domains
1a: CATH_2x86A01 (A:1-167,A:214-236,A:280-292)
1b: CATH_2x86B01 (B:1-167,B:214-236,B:280-292)
1c: CATH_2x86C01 (C:1-167,C:214-236,C:280-292)
1d: CATH_2x86D01 (D:1-167,D:214-236,D:280-292)
1e: CATH_2x86E01 (E:1-167,E:214-236,E:280-292)
1f: CATH_2x86F01 (F:1-167,F:214-236,F:280-292)
1g: CATH_2x86G01 (G:1-167,G:214-236,G:280-292)
1h: CATH_2x86H01 (H:1-167,H:214-236,H:280-292)
1i: CATH_2x86I01 (I:1-167,I:214-236,I:280-292)
1j: CATH_2x86J01 (J:1-167,J:214-236,J:280-292)
1k: CATH_2x86K01 (K:1-167,K:214-236,K:280-292)
1l: CATH_2x86L01 (L:1-167,L:214-236,L:280-292)
1m: CATH_2x86M01 (M:1-167,M:214-236,M:280-292)
1n: CATH_2x86N01 (N:1-167,N:214-236,N:280-292)
1o: CATH_2x86O01 (O:1-167,O:214-236,O:280-292)
1p: CATH_2x86P01 (P:1-167,P:214-236,P:280-292)
1q: CATH_2x86Q01 (Q:1-167,Q:214-236,Q:280-292)
1r: CATH_2x86R01 (R:1-167,R:214-236,R:280-292)
1s: CATH_2x86S01 (S:1-167,S:214-236,S:280-292)
1t: CATH_2x86T01 (T:1-167,T:214-236,T:280-292)
2a: CATH_2x86A02 (A:168-213,A:237-279,A:293-304)
2b: CATH_2x86B02 (B:168-213,B:237-279,B:293-304)
2c: CATH_2x86C02 (C:168-213,C:237-279,C:293-304)
2d: CATH_2x86D02 (D:168-213,D:237-279,D:293-304)
2e: CATH_2x86E02 (E:168-213,E:237-279,E:293-304)
2f: CATH_2x86F02 (F:168-213,F:237-279,F:293-304)
2g: CATH_2x86G02 (G:168-213,G:237-279,G:293-304)
2h: CATH_2x86H02 (H:168-213,H:237-279,H:293-304)
2i: CATH_2x86I02 (I:168-213,I:237-279,I:293-304)
2j: CATH_2x86J02 (J:168-213,J:237-279,J:293-304)
2k: CATH_2x86K02 (K:168-213,K:237-279,K:293-304)
2l: CATH_2x86L02 (L:168-213,L:237-279,L:293-304)
2m: CATH_2x86M02 (M:168-213,M:237-279,M:293-304)
2n: CATH_2x86N02 (N:168-213,N:237-279,N:293-304)
2o: CATH_2x86O02 (O:168-213,O:237-279,O:293-304)
2p: CATH_2x86P02 (P:168-213,P:237-279,P:293-304)
2q: CATH_2x86Q02 (Q:168-213,Q:237-279,Q:293-304)
2r: CATH_2x86R02 (R:168-213,R:237-279,R:293-304)
2s: CATH_2x86S02 (S:168-213,S:237-279,S:293-304)
2t: CATH_2x86T02 (T:168-213,T:237-279,T:293-304)
View:
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562.
(49)
1a
2x86A01
A:1-167,A:214-236,A:280-292
1b
2x86B01
B:1-167,B:214-236,B:280-292
1c
2x86C01
C:1-167,C:214-236,C:280-292
1d
2x86D01
D:1-167,D:214-236,D:280-292
1e
2x86E01
E:1-167,E:214-236,E:280-292
1f
2x86F01
F:1-167,F:214-236,F:280-292
1g
2x86G01
G:1-167,G:214-236,G:280-292
1h
2x86H01
H:1-167,H:214-236,H:280-292
1i
2x86I01
I:1-167,I:214-236,I:280-292
1j
2x86J01
J:1-167,J:214-236,J:280-292
1k
2x86K01
K:1-167,K:214-236,K:280-292
1l
2x86L01
L:1-167,L:214-236,L:280-292
1m
2x86M01
M:1-167,M:214-236,M:280-292
1n
2x86N01
N:1-167,N:214-236,N:280-292
1o
2x86O01
O:1-167,O:214-236,O:280-292
1p
2x86P01
P:1-167,P:214-236,P:280-292
1q
2x86Q01
Q:1-167,Q:214-236,Q:280-292
1r
2x86R01
R:1-167,R:214-236,R:280-292
1s
2x86S01
S:1-167,S:214-236,S:280-292
1t
2x86T01
T:1-167,T:214-236,T:280-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
UDP-galactose 4-epimerase; domain 1
(99)
Homologous Superfamily
:
UDP-galactose 4-epimerase, domain 1
(99)
Escherichia coli. Organism_taxid: 562.
(15)
2a
2x86A02
A:168-213,A:237-279,A:293-304
2b
2x86B02
B:168-213,B:237-279,B:293-304
2c
2x86C02
C:168-213,C:237-279,C:293-304
2d
2x86D02
D:168-213,D:237-279,D:293-304
2e
2x86E02
E:168-213,E:237-279,E:293-304
2f
2x86F02
F:168-213,F:237-279,F:293-304
2g
2x86G02
G:168-213,G:237-279,G:293-304
2h
2x86H02
H:168-213,H:237-279,H:293-304
2i
2x86I02
I:168-213,I:237-279,I:293-304
2j
2x86J02
J:168-213,J:237-279,J:293-304
2k
2x86K02
K:168-213,K:237-279,K:293-304
2l
2x86L02
L:168-213,L:237-279,L:293-304
2m
2x86M02
M:168-213,M:237-279,M:293-304
2n
2x86N02
N:168-213,N:237-279,N:293-304
2o
2x86O02
O:168-213,O:237-279,O:293-304
2p
2x86P02
P:168-213,P:237-279,P:293-304
2q
2x86Q02
Q:168-213,Q:237-279,Q:293-304
2r
2x86R02
R:168-213,R:237-279,R:293-304
2s
2x86S02
S:168-213,S:237-279,S:293-304
2t
2x86T02
T:168-213,T:237-279,T:293-304
[
close CATH info
]
Pfam Domains
(1, 20)
Info
all PFAM domains
1a: PFAM_Epimerase_2x86T01 (T:2-236)
1b: PFAM_Epimerase_2x86T02 (T:2-236)
1c: PFAM_Epimerase_2x86T03 (T:2-236)
1d: PFAM_Epimerase_2x86T04 (T:2-236)
1e: PFAM_Epimerase_2x86T05 (T:2-236)
1f: PFAM_Epimerase_2x86T06 (T:2-236)
1g: PFAM_Epimerase_2x86T07 (T:2-236)
1h: PFAM_Epimerase_2x86T08 (T:2-236)
1i: PFAM_Epimerase_2x86T09 (T:2-236)
1j: PFAM_Epimerase_2x86T10 (T:2-236)
1k: PFAM_Epimerase_2x86T11 (T:2-236)
1l: PFAM_Epimerase_2x86T12 (T:2-236)
1m: PFAM_Epimerase_2x86T13 (T:2-236)
1n: PFAM_Epimerase_2x86T14 (T:2-236)
1o: PFAM_Epimerase_2x86T15 (T:2-236)
1p: PFAM_Epimerase_2x86T16 (T:2-236)
1q: PFAM_Epimerase_2x86T17 (T:2-236)
1r: PFAM_Epimerase_2x86T18 (T:2-236)
1s: PFAM_Epimerase_2x86T19 (T:2-236)
1t: PFAM_Epimerase_2x86T20 (T:2-236)
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(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Epimerase
(42)
Escherichia coli O157:H7
(1)
1a
Epimerase-2x86T01
T:2-236
1b
Epimerase-2x86T02
T:2-236
1c
Epimerase-2x86T03
T:2-236
1d
Epimerase-2x86T04
T:2-236
1e
Epimerase-2x86T05
T:2-236
1f
Epimerase-2x86T06
T:2-236
1g
Epimerase-2x86T07
T:2-236
1h
Epimerase-2x86T08
T:2-236
1i
Epimerase-2x86T09
T:2-236
1j
Epimerase-2x86T10
T:2-236
1k
Epimerase-2x86T11
T:2-236
1l
Epimerase-2x86T12
T:2-236
1m
Epimerase-2x86T13
T:2-236
1n
Epimerase-2x86T14
T:2-236
1o
Epimerase-2x86T15
T:2-236
1p
Epimerase-2x86T16
T:2-236
1q
Epimerase-2x86T17
T:2-236
1r
Epimerase-2x86T18
T:2-236
1s
Epimerase-2x86T19
T:2-236
1t
Epimerase-2x86T20
T:2-236
[
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