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2X85
Biol. Unit 1
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Asym.Unit (209 KB)
Biol.Unit 1 (593 KB)
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(1)
Title
:
TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
Authors
:
N. K. Lorenzen, J. J. Mueller, U. Heinemann, R. Seckler, S. Barbirz
Date
:
05 Mar 10 (Deposition) - 23 Mar 11 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Viral Protein, Viral Adhesion Protein, Endo-N-Acetylglucosaminidase, Hydrolase, Tailspike
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. K. Broeker, U. Gohlke, J. J. Muller, C. Uetrecht, U. Heinemann, R. Seckler, S. Barbirz
Single Amino Acid Exchange In Bacteriophage Hk620 Tailspike Protein Results In Thousand-Fold Increase Of Its Oligosaccharide Affinity.
Glycobiology V. 23 59 2013
(for further references see the
PDB file header
)
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Hetero Components
(5, 21)
Info
All Hetero Components
1a: ALPHA D-GALACTOSE (GLAa)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
5a: ALPHA-L-RHAMNOSE (RAMa)
6a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
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No.
Name
Count
Type
Full Name
1
GLA
3
Ligand/Ion
ALPHA D-GALACTOSE
2
GLC
6
Ligand/Ion
ALPHA-D-GLUCOSE
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
RAM
3
Ligand/Ion
ALPHA-L-RHAMNOSE
6
TRS
3
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:565 , SER A:592 , GLN A:594 , HOH A:2537 , HOH A:2541 , HOH A:2543
BINDING SITE FOR RESIDUE NA A1710
2
AC2
SOFTWARE
TYR A:393 , NAG A:1719 , GLC A:1720 , HOH A:2357 , HOH A:2409
BINDING SITE FOR RESIDUE NA A1711
3
AC3
SOFTWARE
GLY A:211 , RAM A:1715
BINDING SITE FOR RESIDUE NA A1712
4
AC4
SOFTWARE
ASP A:339 , HIS A:340 , SER A:341 , NAG A:1719 , HOH A:2344
BINDING SITE FOR RESIDUE NA A1713
5
AC5
SOFTWARE
VAL A:568 , ASN A:569 , TYR A:597 , ASP A:670 , ILE A:693 , ARG A:697 , HOH A:2515 , HOH A:2638 , HOH A:2675 , HOH A:2676 , HOH A:2677
BINDING SITE FOR RESIDUE TRS A1714
6
AC6
SOFTWARE
GLY A:211 , HIS A:212 , GLN A:242 , LEU A:282 , THR A:307 , TRP A:308 , THR A:311 , TRP A:314 , ASN A:315 , ASP A:339 , SER A:341 , TYR A:344 , ASN A:346 , GLU A:372 , TYR A:393 , HIS A:397 , GLU A:400 , LEU A:427 , GLY A:428 , ASP A:430 , GLY A:468 , PRO A:469 , ASP A:470 , ASN A:471 , NA A:1711 , NA A:1712 , NA A:1713 , HOH A:2177 , HOH A:2270 , HOH A:2274 , HOH A:2403 , HOH A:2410 , HOH A:2678 , HOH A:2679 , HOH A:2680 , HOH A:2681 , HOH A:2682 , HOH A:2684 , HOH A:2685 , HOH A:2686 , HOH A:2687 , HOH A:2688 , HOH A:2689
BINDING SITE FOR CHAIN A OF RESIDUES 1715 TO 1720
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Head_binding_2x85A01 (A:113-114)
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Clans
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(
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Clan
:
no clan defined [family: Head_binding]
(4)
Family
:
Head_binding
(4)
Enterobacteria phage HK620 (Bacteriophage HK620)
(4)
1a
Head_binding-2x85A01
A:113-114
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Chain A
Asymmetric Unit 1
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Asym.Unit (209 KB)
Header - Asym.Unit
Biol.Unit 1 (593 KB)
Header - Biol.Unit 1
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