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2X7O
Biol. Unit 4
Info
Asym.Unit (280 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (58 KB)
Biol.Unit 5 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TGFBRI COMPLEXED WITH AN INDOLINONE INHIBITOR
Authors
:
G. J. Roth, A. Heckel, T. Brandl, M. Grauert, S. Hoerer, J. T. Kley, G. Sch P. Baum, D. Mennerich, A. Schnapp, J. E. Park
Date
:
03 Mar 10 (Deposition) - 20 Oct 10 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Kinase, Transferase, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. J. Roth, A. Heckel, T. Brandl, M. Grauert, S. Hoerer, J. T. Kley, G. Schnapp, P. Baum, D. Mennerich, A. Schnapp, J. E. Park
Design, Synthesis And Evaluation Of Indolinones As Inhibitors Of The Transforming Growth Factor Beta Receptor I (Tgfbri)
J. Med. Chem. V. 53 7287 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (3Z)-N-ETHYL-N-METHYL-2-OXO-3-(PHE... (ZOPa)
1b: (3Z)-N-ETHYL-N-METHYL-2-OXO-3-(PHE... (ZOPb)
1c: (3Z)-N-ETHYL-N-METHYL-2-OXO-3-(PHE... (ZOPc)
1d: (3Z)-N-ETHYL-N-METHYL-2-OXO-3-(PHE... (ZOPd)
1e: (3Z)-N-ETHYL-N-METHYL-2-OXO-3-(PHE... (ZOPe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZOP
1
Ligand/Ion
(3Z)-N-ETHYL-N-METHYL-2-OXO-3-(PHENYL{[4-(PIPERIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)-2,3-DIHYDRO-1H-INDOLE-6-CARBOXAMIDE
[
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Sites
(1, 1)
Info
All Sites
1: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ILE D:211 , GLY D:212 , VAL D:219 , ALA D:230 , LYS D:232 , GLU D:245 , LEU D:260 , LEU D:278 , SER D:280 , ASP D:281 , TYR D:282 , HIS D:283 , GLU D:284 , HIS D:285 , GLY D:286 , ASP D:290 , LEU D:340 , ASP D:351
BINDING SITE FOR RESIDUE ZOP D 600
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SAPs(SNPs)/Variants
(13, 13)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_022344 (T200I, chain D, )
02: VAR_029481 (K232E, chain D, )
03: VAR_029482 (S241L, chain D, )
04: VAR_066720 (D266Y, chain D, )
05: VAR_029483 (N267H, chain D, )
06: VAR_041413 (Y291C, chain D, )
07: VAR_022345 (M318R, chain D, )
08: VAR_066721 (D351G, chain D, )
09: VAR_066722 (T375I, chain D, )
10: VAR_022346 (D400G, chain D, )
11: VAR_022347 (R487P, chain D, )
12: VAR_029484 (R487Q, chain D, )
13: VAR_029485 (R487W, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_022344
T
200
I
TGFR1_HUMAN
Disease (LDS1)
---
D
T
200
I
02
UniProt
VAR_029481
K
232
E
TGFR1_HUMAN
Disease (LDS1)
---
D
K
232
E
03
UniProt
VAR_029482
S
241
L
TGFR1_HUMAN
Disease (LDS1)
---
D
S
241
L
04
UniProt
VAR_066720
D
266
Y
TGFR1_HUMAN
Disease (LDS1)
---
D
D
266
Y
05
UniProt
VAR_029483
N
267
H
TGFR1_HUMAN
Unclassified
---
D
N
267
H
06
UniProt
VAR_041413
Y
291
C
TGFR1_HUMAN
Polymorphism
35974499
D
Y
291
C
07
UniProt
VAR_022345
M
318
R
TGFR1_HUMAN
Disease (LDS1)
---
D
M
318
R
08
UniProt
VAR_066721
D
351
G
TGFR1_HUMAN
Disease (LDS1)
---
D
D
351
G
09
UniProt
VAR_066722
T
375
I
TGFR1_HUMAN
Disease (LDS1)
---
D
T
375
I
10
UniProt
VAR_022346
D
400
G
TGFR1_HUMAN
Disease (LDS1)
---
D
D
400
G
11
UniProt
VAR_022347
R
487
P
TGFR1_HUMAN
Disease (LDS1)
---
D
R
487
P
12
UniProt
VAR_029484
R
487
Q
TGFR1_HUMAN
Disease (LDS1)
---
D
R
487
Q
13
UniProt
VAR_029485
R
487
W
TGFR1_HUMAN
Disease (LDS1)
---
D
R
487
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: GS (D:175-204)
2: PROTEIN_KINASE_ATP (D:211-232)
3: PROTEIN_KINASE_ST (D:329-341)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GS
PS51256
GS domain profile.
TGFR1_HUMAN
175-204
1
-
-
-
D:175-204
-
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
TGFR1_HUMAN
211-232
1
-
-
-
D:211-232
-
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
TGFR1_HUMAN
329-341
1
-
-
-
D:329-341
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 10)
Info
all PFAM domains
1a: PFAM_Pkinase_2x7oE01 (E:205-492)
1b: PFAM_Pkinase_2x7oE02 (E:205-492)
1c: PFAM_Pkinase_2x7oE03 (E:205-492)
1d: PFAM_Pkinase_2x7oE04 (E:205-492)
1e: PFAM_Pkinase_2x7oE05 (E:205-492)
2a: PFAM_TGF_beta_GS_2x7oE06 (E:175-203)
2b: PFAM_TGF_beta_GS_2x7oE07 (E:175-203)
2c: PFAM_TGF_beta_GS_2x7oE08 (E:175-203)
2d: PFAM_TGF_beta_GS_2x7oE09 (E:175-203)
2e: PFAM_TGF_beta_GS_2x7oE10 (E:175-203)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2x7oE01
E:205-492
1b
Pkinase-2x7oE02
E:205-492
1c
Pkinase-2x7oE03
E:205-492
1d
Pkinase-2x7oE04
E:205-492
1e
Pkinase-2x7oE05
E:205-492
Clan
:
no clan defined [family: TGF_beta_GS]
(12)
Family
:
TGF_beta_GS
(12)
Homo sapiens (Human)
(12)
2a
TGF_beta_GS-2x7oE06
E:175-203
2b
TGF_beta_GS-2x7oE07
E:175-203
2c
TGF_beta_GS-2x7oE08
E:175-203
2d
TGF_beta_GS-2x7oE09
E:175-203
2e
TGF_beta_GS-2x7oE10
E:175-203
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Chain D
Asymmetric Unit 1
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Asym.Unit (280 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
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Biol.Unit 3 (58 KB)
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Biol.Unit 4 (58 KB)
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