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2X6T
Biol. Unit 1
Info
Asym.Unit (542 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 10 (61 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (61 KB)
Biol.Unit 5 (61 KB)
Biol.Unit 6 (61 KB)
Biol.Unit 7 (62 KB)
Biol.Unit 8 (61 KB)
Biol.Unit 9 (61 KB)
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(1)
Title
:
AGME BOUND TO ADP-B-MANNOSE
Authors
:
T. Kowatz, J. P. Morrison, M. E. Tanner, J. H. Naismith
Date
:
21 Feb 10 (Deposition) - 02 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.36
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Keywords
:
Isomerase, Carbohydrate Metabolism, Stress Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kowatz, J. P. Morrison, M. E. Tanner, J. H. Naismith
The Crystal Structure Of The Y140F Mutant Of Adp-L- Glycero-D-Manno-Heptose 6-Epimerase Bound To Adp- Beta-D-Mannose Suggests A One Base Mechanism.
Protein Sci. V. 19 1337 2010
[
close entry info
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
2g: BETA-D-MANNOSE (BMAg)
2h: BETA-D-MANNOSE (BMAh)
2i: BETA-D-MANNOSE (BMAi)
2j: BETA-D-MANNOSE (BMAj)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
5a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
5b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
5c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
5d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
5e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
5f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
5g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
5h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
5i: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPi)
5j: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:6 , GLY A:9 , PHE A:10 , ILE A:11 , ASP A:31 , ASN A:32 , LYS A:38 , LYS A:53 , GLU A:75 , GLY A:76 , ALA A:77 , SER A:79 , ASN A:92 , TYR A:96 , ALA A:114 , SER A:115 , SER A:116 , PHE A:140 , LYS A:144 , TYR A:167 , PHE A:168 , VAL A:170 , HIS A:177 , LYS A:178 , BMA A:1321 , HOH A:2003 , HOH A:2179 , HOH A:2180 , HOH A:2181 , HOH A:2183
BINDING SITE FOR RESIDUE NAP A1308
2
AC2
SOFTWARE
THR A:81 , ASN A:169 , SER A:180 , MET A:181 , ALA A:182 , VAL A:184 , HIS A:187 , LEU A:200 , PHE A:201 , SER A:204 , ARG A:209 , PHE A:243 , TYR A:272 , BMA A:1321 , HOH A:2153 , HOH A:2182 , HOH A:2183 , HOH A:2184 , HOH A:2185
BINDING SITE FOR RESIDUE ADP A1320
3
AC3
SOFTWARE
SER A:79 , SER A:116 , PHE A:140 , LYS A:178 , MET A:181 , NAP A:1308 , ADP A:1320 , HOH A:2183 , HOH A:2185
BINDING SITE FOR RESIDUE BMA A1321
4
AC4
SOFTWARE
ASN A:93 , TYR A:94 , SER A:97 , TYR A:113 , ALA A:114 , SER A:115 , SER A:143 , LYS A:144 , PHE A:147 , ASP A:148 , HOH A:2088 , HOH A:2186
BINDING SITE FOR RESIDUE GOL A1310
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2x6ta_ (A:)
1b: SCOP_d2x6tb_ (B:)
1c: SCOP_d2x6tc_ (C:)
1d: SCOP_d2x6td_ (D:)
1e: SCOP_d2x6te_ (E:)
1f: SCOP_d2x6tf_ (F:)
1g: SCOP_d2x6tg_ (G:)
1h: SCOP_d2x6th_ (H:)
1i: SCOP_d2x6ti_ (I:)
1j: SCOP_d2x6tj_ (J:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Escherichia coli [TaxId: 562]
(2)
1a
d2x6ta_
A:
1b
d2x6tb_
B:
1c
d2x6tc_
C:
1d
d2x6td_
D:
1e
d2x6te_
E:
1f
d2x6tf_
F:
1g
d2x6tg_
G:
1h
d2x6th_
H:
1i
d2x6ti_
I:
1j
d2x6tj_
J:
[
close SCOP info
]
CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_2x6tA01 (A:1-167,A:214-236,A:280-292)
1b: CATH_2x6tB01 (B:1-167,B:214-236,B:280-292)
1c: CATH_2x6tC01 (C:1-167,C:214-236,C:280-292)
1d: CATH_2x6tD01 (D:1-167,D:214-236,D:280-292)
1e: CATH_2x6tE01 (E:1-167,E:214-236,E:280-292)
1f: CATH_2x6tF01 (F:1-167,F:214-236,F:280-292)
1g: CATH_2x6tG01 (G:1-167,G:214-236,G:280-292)
1h: CATH_2x6tH01 (H:1-167,H:214-236,H:280-292)
1i: CATH_2x6tI01 (I:1-167,I:214-236,I:280-292)
1j: CATH_2x6tJ01 (J:1-167,J:214-236,J:280-292)
2a: CATH_2x6tA02 (A:168-213,A:237-279,A:293-304)
2b: CATH_2x6tB02 (B:168-213,B:237-279,B:293-304)
2c: CATH_2x6tC02 (C:168-213,C:237-279,C:293-304)
2d: CATH_2x6tD02 (D:168-213,D:237-279,D:293-304)
2e: CATH_2x6tE02 (E:168-213,E:237-279,E:293-304)
2f: CATH_2x6tF02 (F:168-213,F:237-279,F:293-304)
2g: CATH_2x6tG02 (G:168-213,G:237-279,G:293-304)
2h: CATH_2x6tH02 (H:168-213,H:237-279,H:293-304)
2i: CATH_2x6tI02 (I:168-213,I:237-279,I:293-304)
2j: CATH_2x6tJ02 (J:168-213,J:237-279,J:293-304)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562.
(49)
1a
2x6tA01
A:1-167,A:214-236,A:280-292
1b
2x6tB01
B:1-167,B:214-236,B:280-292
1c
2x6tC01
C:1-167,C:214-236,C:280-292
1d
2x6tD01
D:1-167,D:214-236,D:280-292
1e
2x6tE01
E:1-167,E:214-236,E:280-292
1f
2x6tF01
F:1-167,F:214-236,F:280-292
1g
2x6tG01
G:1-167,G:214-236,G:280-292
1h
2x6tH01
H:1-167,H:214-236,H:280-292
1i
2x6tI01
I:1-167,I:214-236,I:280-292
1j
2x6tJ01
J:1-167,J:214-236,J:280-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
UDP-galactose 4-epimerase; domain 1
(99)
Homologous Superfamily
:
UDP-galactose 4-epimerase, domain 1
(99)
Escherichia coli. Organism_taxid: 562.
(15)
2a
2x6tA02
A:168-213,A:237-279,A:293-304
2b
2x6tB02
B:168-213,B:237-279,B:293-304
2c
2x6tC02
C:168-213,C:237-279,C:293-304
2d
2x6tD02
D:168-213,D:237-279,D:293-304
2e
2x6tE02
E:168-213,E:237-279,E:293-304
2f
2x6tF02
F:168-213,F:237-279,F:293-304
2g
2x6tG02
G:168-213,G:237-279,G:293-304
2h
2x6tH02
H:168-213,H:237-279,H:293-304
2i
2x6tI02
I:168-213,I:237-279,I:293-304
2j
2x6tJ02
J:168-213,J:237-279,J:293-304
[
close CATH info
]
Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_Epimerase_2x6tJ01 (J:2-236)
1b: PFAM_Epimerase_2x6tJ02 (J:2-236)
1c: PFAM_Epimerase_2x6tJ03 (J:2-236)
1d: PFAM_Epimerase_2x6tJ04 (J:2-236)
1e: PFAM_Epimerase_2x6tJ05 (J:2-236)
1f: PFAM_Epimerase_2x6tJ06 (J:2-236)
1g: PFAM_Epimerase_2x6tJ07 (J:2-236)
1h: PFAM_Epimerase_2x6tJ08 (J:2-236)
1i: PFAM_Epimerase_2x6tJ09 (J:2-236)
1j: PFAM_Epimerase_2x6tJ10 (J:2-236)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Epimerase
(42)
Escherichia coli (strain K12)
(19)
1a
Epimerase-2x6tJ01
J:2-236
1b
Epimerase-2x6tJ02
J:2-236
1c
Epimerase-2x6tJ03
J:2-236
1d
Epimerase-2x6tJ04
J:2-236
1e
Epimerase-2x6tJ05
J:2-236
1f
Epimerase-2x6tJ06
J:2-236
1g
Epimerase-2x6tJ07
J:2-236
1h
Epimerase-2x6tJ08
J:2-236
1i
Epimerase-2x6tJ09
J:2-236
1j
Epimerase-2x6tJ10
J:2-236
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Asym.Unit (542 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 10 (61 KB)
Header - Biol.Unit 10
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
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