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2X65
Asym. Unit
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Asym.Unit (123 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN COMPLEX WITH MANNOSE-1-PHOSPHATE.
Authors
:
M. C. Pelissier, S. Lesley, P. Kuhn, Y. Bourne
Date
:
15 Feb 10 (Deposition) - 23 Jun 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Nucleotidyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Pelissier, S. Lesley, P. Kuhn, Y. Bourne
Structural Insights Into The Catalytic Mechanism Of Bacterial Guanosine-Diphospho-D-Mannose Pyrophosphorylase And Its Regulation By Divalent Ions.
J. Biol. Chem. V. 285 27468 2010
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE 1-PHOSPHATE (M1Pa)
1b: ALPHA-D-MANNOSE 1-PHOSPHATE (M1Pb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
5a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
M1P
2
Ligand/Ion
ALPHA-D-MANNOSE 1-PHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MRD
2
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
5
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:110 , TYR A:149 , GLY A:150 , GLU A:170 , LYS A:171 , ASN A:189 , SER A:190 , GLY A:191 , ASP A:239 , ASP A:260 , MG A:601 , HOH A:2041 , HOH A:2061 , HOH A:2062 , HOH A:2063 , HOH A:2064 , HOH A:2065
BINDING SITE FOR RESIDUE M1P A 600
02
AC2
SOFTWARE
M1P A:600 , HOH A:2023 , HOH A:2061 , HOH A:2062 , HOH A:2063 , HOH A:2064
BINDING SITE FOR RESIDUE MG A 601
03
AC3
SOFTWARE
HIS B:110 , TYR B:149 , GLY B:150 , GLU B:170 , LYS B:171 , ASN B:189 , SER B:190 , GLY B:191 , ASP B:239 , TRP B:258 , ASP B:260 , MG B:601 , HOH B:2087 , HOH B:2088 , HOH B:2089
BINDING SITE FOR RESIDUE M1P B 600
04
AC4
SOFTWARE
M1P B:600 , HOH B:2031 , HOH B:2087 , HOH B:2088 , HOH B:2089
BINDING SITE FOR RESIDUE MG B 601
05
AC5
SOFTWARE
SER B:11 , GLY B:12 , GLU B:13 , ARG B:14 , ARG B:326 , HOH B:2090 , HOH B:2091
BINDING SITE FOR RESIDUE PO4 B 602
06
AC6
SOFTWARE
PHE A:31 , ARG A:111 , HOH A:2066 , HOH A:2067 , THR B:115
BINDING SITE FOR RESIDUE MRD A1335
07
AC7
SOFTWARE
THR A:115 , HOH A:2068 , PHE B:31 , ARG B:111
BINDING SITE FOR RESIDUE MRD A1336
08
AC8
SOFTWARE
THR A:274 , GLU A:275 , HOH A:2051 , HOH A:2069 , ASP B:127 , HOH B:2038
BINDING SITE FOR RESIDUE MPD A1337
09
AC9
SOFTWARE
LYS A:66 , PRO A:70 , ASP A:74
BINDING SITE FOR RESIDUE MPD A1338
10
BC1
SOFTWARE
LYS A:123 , LYS A:124 , ASP A:127 , HOH A:2070 , HOH A:2071
BINDING SITE FOR RESIDUE MPD A1339
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NTP_transferase_2x65B01 (B:3-277)
1b: PFAM_NTP_transferase_2x65B02 (B:3-277)
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Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
NTP_transferase
(15)
Thermotoga maritima
(4)
1a
NTP_transferase-2x65B01
B:3-277
1b
NTP_transferase-2x65B02
B:3-277
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Asymmetric Unit 1
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Asym.Unit (123 KB)
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