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Asym. Unit
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Asym.Unit (242 KB)
Biol.Unit 1 (235 KB)
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(1)
Title
:
STRUCTURE OF AN ACTIVE SITE MUTANT OF THE D-ERYTHROSE-4-PHOSPHATE DEHYDROGENASE FROM E. COLI
Authors
:
S. Moniot, C. Didierjean, S. Boschi-Muller, G. Branlant, C. Corbier
Date
:
10 Feb 10 (Deposition) - 16 Feb 11 (Release) - 16 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : O,P,Q,R
Biol. Unit 1: O,P,Q,R (1x)
Keywords
:
S-Loop, Oxidoreductase, Hydride Transfer, Aldehyde Dehydrogenase, Pyridoxine Biosynthesis
(Keyword Search:
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Reference
:
S. Moniot, C. Didierjean, S. Boschi-Muller, G. Branlant, C. Corbier
Structural Characterization Of Erythrose-4- Phosphate Dehydrogenase From Escherichia Coli: Peculiar Features When Compared To Phosphorylating Gapdhs
To Be Published
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: TETRAETHYLENE GLYCOL (PG4a)
6a: TRIETHYLENE GLYCOL (PGEa)
6b: TRIETHYLENE GLYCOL (PGEb)
6c: TRIETHYLENE GLYCOL (PGEc)
6d: TRIETHYLENE GLYCOL (PGEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
6
Ligand/Ion
GLYCEROL
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP P:323 , HOH P:2022 , HOH P:2245
BINDING SITE FOR RESIDUE GOL P1335
02
AC2
SOFTWARE
ALA R:54 , TRP R:55
BINDING SITE FOR RESIDUE GOL R1334
03
AC3
SOFTWARE
ASN O:123 , LEU R:33 , ALA R:34 , HIS R:75 , HOH R:2203
BINDING SITE FOR RESIDUE GOL R1335
04
AC4
SOFTWARE
ALA O:164 , HOH O:2147
BINDING SITE FOR RESIDUE GOL O1336
05
AC5
SOFTWARE
GLU P:86 , HOH P:2029 , HOH P:2246
BINDING SITE FOR RESIDUE GOL P1336
06
AC6
SOFTWARE
VAL O:98
BINDING SITE FOR RESIDUE EDO O1337
07
AC7
SOFTWARE
TRP P:55
BINDING SITE FOR RESIDUE EDO P1337
08
AC8
SOFTWARE
HOH R:2170
BINDING SITE FOR RESIDUE EDO R1336
09
AC9
SOFTWARE
ALA O:38 , HOH O:2257 , ARG P:142 , ARG P:334 , LEU R:193
BINDING SITE FOR RESIDUE PG4 O1338
10
BC1
SOFTWARE
THR P:48 , ARG Q:197 , ALA Q:198
BINDING SITE FOR RESIDUE CL P1338
11
BC2
SOFTWARE
THR O:48 , ARG R:197 , ALA R:198
BINDING SITE FOR RESIDUE CL O1339
12
BC3
SOFTWARE
ARG P:197 , ALA P:198 , THR Q:48
BINDING SITE FOR RESIDUE CL Q1339
13
BC4
SOFTWARE
ARG P:58 , GLU P:60
BINDING SITE FOR RESIDUE PEG P1340
14
BC5
SOFTWARE
LEU Q:193
BINDING SITE FOR RESIDUE PEG P1341
15
BC6
SOFTWARE
GLN O:264 , HIS O:268
BINDING SITE FOR RESIDUE PGE O1340
16
BC7
SOFTWARE
GLU P:103 , ALA P:110 , HOH P:2109 , TYR R:188 , HIS R:190
BINDING SITE FOR RESIDUE PGE P1342
17
BC8
SOFTWARE
GLY Q:97 , VAL Q:98 , GLY Q:100 , HIS Q:120 , SER Q:122A
BINDING SITE FOR RESIDUE PGE Q1336
18
BC9
SOFTWARE
VAL P:98 , TYR P:99 , HIS P:104 , HOH R:2075
BINDING SITE FOR RESIDUE PGE P1343
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (O:147-154,P:147-154,Q:147-154,R:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
E4PD_ECOLI
153-160
4
O:147-154
P:147-154
Q:147-154
R:147-154
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Gp_dh_C_2x5kR01 (R:154-311)
1b: PFAM_Gp_dh_C_2x5kR02 (R:154-311)
1c: PFAM_Gp_dh_C_2x5kR03 (R:154-311)
1d: PFAM_Gp_dh_C_2x5kR04 (R:154-311)
2a: PFAM_Gp_dh_N_2x5kR05 (R:1-149)
2b: PFAM_Gp_dh_N_2x5kR06 (R:1-149)
2c: PFAM_Gp_dh_N_2x5kR07 (R:1-149)
2d: PFAM_Gp_dh_N_2x5kR08 (R:1-149)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
GADPH_aa-bio_dh
(59)
Family
:
Gp_dh_C
(38)
Escherichia coli (strain K12)
(5)
1a
Gp_dh_C-2x5kR01
R:154-311
1b
Gp_dh_C-2x5kR02
R:154-311
1c
Gp_dh_C-2x5kR03
R:154-311
1d
Gp_dh_C-2x5kR04
R:154-311
Clan
:
NADP_Rossmann
(1239)
Family
:
Gp_dh_N
(38)
Escherichia coli (strain K12)
(5)
2a
Gp_dh_N-2x5kR05
R:1-149
2b
Gp_dh_N-2x5kR06
R:1-149
2c
Gp_dh_N-2x5kR07
R:1-149
2d
Gp_dh_N-2x5kR08
R:1-149
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (242 KB)
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