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2X58
Biol. Unit 2
Info
Asym.Unit (238 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (117 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF MFE1 LIGANDED WITH COA
Authors
:
P. Kasaragod, R. Venkatesan, T. R. Kiema, J. K. Hiltunen, R. K. Wierenga
Date
:
05 Feb 10 (Deposition) - 12 May 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Oxidation Pathway, Oxidoreductase, Lipid Metabolism, Lyase, Isomerase, Peroxisome, Fatty Acid Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Kasaragod, R. Venkatesan, T. R. Kiema, J. K. Hiltunen, R. K. Wierenga
The Crystal Structure Of Liganded Rat Peroxisomal Multifunctional Enzyme Type 1: A Flexible Molecule With Two Interconnected Active Sites
J. Biol. Chem. V. 285 24089 2010
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
-1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
COA
1
Ligand/Ion
COENZYME A
3
GOL
2
Ligand/Ion
GLYCEROL
4
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC8 (SOFTWARE)
6: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
PRO A:20 , VAL A:21 , ALA A:23 , ALA A:59 , ALA A:61 , ASP A:62 , ILE A:63 , HIS A:64 , ARG A:118 , GLU A:123 , TYR A:156 , GOL A:770 , LYS B:249
BINDING SITE FOR RESIDUE COA A 760
2
AC4
SOFTWARE
PRO B:20 , ALA B:59 , ALA B:61 , ASP B:62 , ILE B:63 , VAL B:96 , GLY B:99 , TYR B:156 , LYS B:275 , LYS B:279 , GOL B:770
BINDING SITE FOR RESIDUE COA B 760
3
AC5
SOFTWARE
LEU B:73 , GLU B:103 , GLU B:123 , PRO B:130 , GLY B:131 , ALA B:132 , COA B:760
BINDING SITE FOR RESIDUE GOL B 770
4
AC6
SOFTWARE
VAL B:549 , ARG B:550 , HIS B:606
BINDING SITE FOR RESIDUE GOL B 780
5
AC8
SOFTWARE
GLY B:305 , THR B:306 , MET B:307
BINDING SITE FOR RESIDUE SO4 B1719
6
BC2
SOFTWARE
PRO B:191 , ILE B:192 , GLU B:193 , ARG B:196
BINDING SITE FOR RESIDUE SO4 B1720
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (B:90-110)
2: 3HCDH (B:474-498)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECHP_RAT
90-110
1
-
B:90-110
2
3HCDH
PS00067
3-hydroxyacyl-CoA dehydrogenase signature.
ECHP_RAT
474-498
1
-
B:474-498
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_3HCDH_2x58B01 (B:618-714)
1b: PFAM_3HCDH_2x58B02 (B:618-714)
1c: PFAM_3HCDH_2x58B03 (B:618-714)
1d: PFAM_3HCDH_2x58B04 (B:618-714)
2a: PFAM_ECH_2x58B05 (B:4-251)
2b: PFAM_ECH_2x58B06 (B:4-251)
3a: PFAM_3HCDH_N_2x58B07 (B:298-475)
3b: PFAM_3HCDH_N_2x58B08 (B:298-475)
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)
(
)
Clan
:
6PGD_C
(47)
Family
:
3HCDH
(12)
Rattus norvegicus (Rat)
(2)
1a
3HCDH-2x58B01
B:618-714
1b
3HCDH-2x58B02
B:618-714
1c
3HCDH-2x58B03
B:618-714
1d
3HCDH-2x58B04
B:618-714
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Rattus norvegicus (Rat)
(3)
2a
ECH-2x58B05
B:4-251
2b
ECH-2x58B06
B:4-251
Clan
:
NADP_Rossmann
(1239)
Family
:
3HCDH_N
(12)
Rattus norvegicus (Rat)
(2)
3a
3HCDH_N-2x58B07
B:298-475
3b
3HCDH_N-2x58B08
B:298-475
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Chain B
Asymmetric Unit 1
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Asym.Unit (238 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (117 KB)
Header - Biol.Unit 2
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