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2X55
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA (NATIVE)
Authors
:
E. Eren, M. Murphy, J. Goguen, B. Van Den Berg
Date
:
05 Feb 10 (Deposition) - 28 Jul 10 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transmembrane, Aspartyl Protease, Cell Outer Membrane, Omptin, Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Eren, M. Murphy, J. Goguen, B. Van Den Berg
An Active Site Water Network In The Plasminogen Activator Pla From Yersinia Pestis
Structure V. 18 809 2010
[
close entry info
]
Hetero Components
(2, 25)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
1g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
1h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
1i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
1j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
1k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
1l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
1m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
1n: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8En)
1o: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eo)
1p: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ep)
1q: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eq)
1r: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Er)
1s: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Es)
1t: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Et)
1u: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eu)
1v: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ev)
1w: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ew)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C8E
23
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
C8E A:1303
BINDING SITE FOR RESIDUE C8E A1293
02
AC2
SOFTWARE
GLY A:55 , GLY A:71 , ASN A:110 , TYR A:112 , ARG A:138
BINDING SITE FOR RESIDUE C8E A1295
03
AC3
SOFTWARE
ALA A:18 , LEU A:53 , SER A:74 , LEU A:288 , TYR A:290 , C8E A:1307
BINDING SITE FOR RESIDUE C8E A1296
04
AC4
SOFTWARE
TRP A:59 , PRO A:61 , TYR A:62
BINDING SITE FOR RESIDUE C8E A1297
05
AC5
SOFTWARE
GLY A:133 , ILE A:177 , TRP A:199
BINDING SITE FOR RESIDUE C8E A1298
06
AC6
SOFTWARE
THR A:20 , ASN A:49 , C8E A:1306 , C8E A:1307
BINDING SITE FOR RESIDUE C8E A1300
07
AC7
SOFTWARE
C8E A:1315
BINDING SITE FOR RESIDUE C8E A1301
08
AC8
SOFTWARE
TYR A:62 , LEU A:120 , C8E A:1311
BINDING SITE FOR RESIDUE C8E A1302
09
AC9
SOFTWARE
ARG A:70 , GLY A:71 , TYR A:112 , C8E A:1293
BINDING SITE FOR RESIDUE C8E A1303
10
BC1
SOFTWARE
LEU A:179 , ALA A:192 , PHE A:194 , THR A:227
BINDING SITE FOR RESIDUE C8E A1304
11
BC2
SOFTWARE
GLU A:29 , HIS A:208 , GLU A:217 , C8E A:1314
BINDING SITE FOR RESIDUE C8E A1305
12
BC3
SOFTWARE
VAL A:284 , ALA A:286 , C8E A:1300
BINDING SITE FOR RESIDUE C8E A1306
13
BC4
SOFTWARE
ALA A:18 , THR A:20 , VAL A:241 , ALA A:286 , GLY A:287 , C8E A:1296 , C8E A:1300 , C8E A:1313
BINDING SITE FOR RESIDUE C8E A1307
14
BC5
SOFTWARE
PHE A:245
BINDING SITE FOR RESIDUE C8E A1308
15
BC6
SOFTWARE
C8E A:1312
BINDING SITE FOR RESIDUE C8E A1309
16
BC7
SOFTWARE
ILE A:130 , ILE A:177 , GLY A:178 , LEU A:179
BINDING SITE FOR RESIDUE C8E A1310
17
BC8
SOFTWARE
PHE A:64 , VAL A:116 , TRP A:119 , LEU A:120 , C8E A:1302
BINDING SITE FOR RESIDUE C8E A1311
18
BC9
SOFTWARE
PHE A:14 , C8E A:1309
BINDING SITE FOR RESIDUE C8E A1312
19
CC1
SOFTWARE
PHE A:242 , C8E A:1307
BINDING SITE FOR RESIDUE C8E A1313
20
CC2
SOFTWARE
ASP A:86 , C8E A:1305
BINDING SITE FOR RESIDUE C8E A1314
21
CC3
SOFTWARE
TYR A:126 , C8E A:1301
BINDING SITE FOR RESIDUE C8E A1315
22
CC4
SOFTWARE
TYR A:62 , SER A:63 , ASN A:89 , ASN A:91
BINDING SITE FOR RESIDUE SO4 A1316
23
CC5
SOFTWARE
ARG A:171 , SER A:173 , ARG A:201 , HIS A:203 , HOH A:2155 , HOH A:2200
BINDING SITE FOR RESIDUE SO4 A1317
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: OMPTIN_1 (A:95-104)
2: OMPTIN_2 (A:132-148)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPTIN_1
PS00834
Aspartyl proteases, omptin family signature 1.
COLY_YERPE
115-124
1
A:95-104
2
OMPTIN_2
PS00835
Aspartyl proteases, omptin family signature 2.
COLY_YERPE
152-168
1
A:132-148
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2x55a_ (A:)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
OMPT-like
(6)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Yersinia pestis [TaxId: 632]
(3)
1a
d2x55a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2x55A00 (A:4-293)
View:
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Classes
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)
(
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Architectures
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
OMPT-like
(4)
Yersinia pestis. Organism_taxid: 632.
(3)
1a
2x55A00
A:4-293
[
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]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Omptin_2x55A01 (A:4-292)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
MBB
(97)
Family
:
Omptin
(2)
Yersinia pestis
(2)
1a
Omptin-2x55A01
A:4-292
[
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]
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select residue range 5 to 10 in chain 'A'
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