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Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (357 KB)
Biol.Unit 2 (358 KB)
Biol.Unit 3 (359 KB)
Biol.Unit 4 (357 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GRACILARIOPSIS LEMANEIFORMIS ALPHA- 1,4-GLUCAN LYASE WITH DEOXYNOJIRIMYCIN
Authors
:
H. J. Rozeboom, S. Yu, S. Madrid, K. H. Kalk, B. W. Dijkstra
Date
:
13 Jan 10 (Deposition) - 19 Jan 11 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Starch Binding Domain, Anhydrofructose Pathway, Lyase, Glycoside Hydrolase Family 31
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Rozeboom, S. Yu, S. Madrid, K. H. Kalk, R. Zhang, B. W. Dijkstra
Crystal Structure Of Alpha-1, 4-Glucan Lyase, A Unique Glycoside Hydrolase Family Member With A Novel Catalytic Mechanism.
J. Biol. Chem. V. 288 26764 2013
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
2c: S-HYDROXYCYSTEINE (CSOc)
2d: S-HYDROXYCYSTEINE (CSOd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
4a: 1-DEOXYNOJIRIMYCIN (NOJa)
4b: 1-DEOXYNOJIRIMYCIN (NOJb)
4c: 1-DEOXYNOJIRIMYCIN (NOJc)
4d: 1-DEOXYNOJIRIMYCIN (NOJd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
CSO
4
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GOL
11
Ligand/Ion
GLYCEROL
4
NOJ
4
Ligand/Ion
1-DEOXYNOJIRIMYCIN
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:373 , ASP A:412 , ASN A:459 , TYR A:513 , TRP A:551 , ASP A:553 , ARG A:649 , TRP A:662 , ASP A:665 , PHE A:698 , HIS A:731 , HOH A:3301 , HOH A:3442
BINDING SITE FOR RESIDUE NOJ A 1050
02
AC2
SOFTWARE
PHE B:373 , ASP B:412 , ASN B:459 , TYR B:513 , TRP B:551 , ASP B:553 , ARG B:649 , TRP B:662 , ASP B:665 , PHE B:698 , HIS B:731 , HOH B:3192 , HOH B:3251
BINDING SITE FOR RESIDUE NOJ B 1050
03
AC3
SOFTWARE
PHE C:373 , ASP C:412 , ASN C:459 , TYR C:513 , TRP C:551 , ASP C:553 , MET C:554 , ARG C:649 , TRP C:662 , ASP C:665 , PHE C:698 , HIS C:731 , HOH C:3235 , HOH C:3459
BINDING SITE FOR RESIDUE NOJ C 1050
04
AC4
SOFTWARE
PHE D:373 , ASP D:412 , ASN D:459 , TYR D:513 , ASP D:553 , MET D:554 , ARG D:649 , TRP D:662 , ASP D:665 , PHE D:698 , HIS D:731 , HOH D:3165 , HOH D:3217
BINDING SITE FOR RESIDUE NOJ D 1050
05
AC5
SOFTWARE
THR C:24 , VAL C:28 , GLY C:32 , PHE C:33 , GLN C:318 , HOH C:3460
BINDING SITE FOR RESIDUE GOL C 2039
06
AC6
SOFTWARE
LYS C:363 , ARG C:885 , TYR C:898 , THR C:899 , ASP C:900 , GLY C:925
BINDING SITE FOR RESIDUE GOL C 2040
07
AC7
SOFTWARE
MET A:792 , ASN A:794 , ASP A:813 , TYR A:815 , ARG A:877
BINDING SITE FOR RESIDUE GOL A 2039
08
AC8
SOFTWARE
ASP A:958 , CYS A:959 , TYR A:960 , GLU A:961 , HOH A:3412
BINDING SITE FOR RESIDUE GOL A 2040
09
AC9
SOFTWARE
LYS A:363 , TYR A:773 , ARG A:885 , ASP A:900 , ASP A:923 , ASP A:924 , GLY A:925 , HOH A:3330 , HOH A:3443
BINDING SITE FOR RESIDUE GOL A 2041
10
BC1
SOFTWARE
THR A:668 , THR A:669 , SER A:670 , TYR A:701 , THR A:711 , GLU A:825 , HOH A:3350 , HOH A:3444
BINDING SITE FOR RESIDUE GOL A 2042
11
BC2
SOFTWARE
TRP A:824
BINDING SITE FOR RESIDUE GOL A 2043
12
BC3
SOFTWARE
MET C:792 , ASN C:794 , ASP C:813 , TYR C:815 , ARG C:877
BINDING SITE FOR RESIDUE GOL C 2042
13
BC4
SOFTWARE
TYR B:793 , ASN B:794 , ASP B:813 , TYR B:815 , ARG B:877
BINDING SITE FOR RESIDUE GOL B 2039
14
BC5
SOFTWARE
TYR D:793 , ASN D:794 , TYR D:815 , ARG D:877
BINDING SITE FOR RESIDUE GOL D 2039
15
BC6
SOFTWARE
THR A:555 , ARG A:649
BINDING SITE FOR RESIDUE CL A 2044
16
BC7
SOFTWARE
THR B:555 , VAL B:556 , ARG B:649
BINDING SITE FOR RESIDUE CL B 2040
17
BC8
SOFTWARE
TYR C:266 , THR C:555 , ARG C:649
BINDING SITE FOR RESIDUE CL C 2043
18
BC9
SOFTWARE
THR D:555 , ARG D:649
BINDING SITE FOR RESIDUE CL D 2040
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (357 KB)
Header - Biol.Unit 1
Biol.Unit 2 (358 KB)
Header - Biol.Unit 2
Biol.Unit 3 (359 KB)
Header - Biol.Unit 3
Biol.Unit 4 (357 KB)
Header - Biol.Unit 4
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