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2X2I
Biol. Unit 1
Info
Asym.Unit (685 KB)
Biol.Unit 1 (179 KB)
Biol.Unit 2 (176 KB)
Biol.Unit 3 (179 KB)
Biol.Unit 4 (176 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GRACILARIOPSIS LEMANEIFORMIS ALPHA-1,4-GLUCAN LYASE WITH ACARBOSE
Authors
:
H. J. Rozeboom, S. Yu, S. Madrid, K. H. Kalk, B. W. Dijkstra
Date
:
13 Jan 10 (Deposition) - 19 Jan 11 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Anhydrofructose Pathway, Glycoside Hydrolase Family 31, Lyase, Starch Binding Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Rozeboom, S. Yu, S. Madrid, K. H. Kalk, R. Zhang, B. W. Dijkstra
Crystal Structure Of Alpha-1, 4-Glucan Lyase, A Unique Glycoside Hydrolase Family Member With A Novel Catalytic Mechanism.
J. Biol. Chem. V. 288 26764 2013
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
1c: S-HYDROXYCYSTEINE (CSOc)
1d: S-HYDROXYCYSTEINE (CSOd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: BETA-ACARBOSE (QPSa)
3b: BETA-ACARBOSE (QPSb)
3c: BETA-ACARBOSE (QPSc)
3d: BETA-ACARBOSE (QPSd)
3e: BETA-ACARBOSE (QPSe)
3f: BETA-ACARBOSE (QPSf)
3g: BETA-ACARBOSE (QPSg)
3h: BETA-ACARBOSE (QPSh)
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Label:
No.
Name
Count
Type
Full Name
1
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
GOL
4
Ligand/Ion
GLYCEROL
3
QPS
2
Ligand/Ion
BETA-ACARBOSE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:239 , LEU A:241 , GLN A:245 , ASP A:412 , ASN A:459 , ASP A:512 , TYR A:513 , TRP A:551 , ASP A:553 , MET A:554 , ARG A:649 , TRP A:662 , ASP A:665 , PHE A:698 , HIS A:731 , HIS A:741 , HOH A:2117 , HOH A:2153
BINDING SITE FOR RESIDUE QPS A 1050
2
AC2
SOFTWARE
THR A:24 , VAL A:28 , GLY A:32 , PHE A:33 , SER A:34 , SER A:37 , THR A:39 , ASN A:40 , TRP A:41 , GLY A:190 , ASN A:191 , ALA A:192 , GLN A:318
BINDING SITE FOR RESIDUE QPS A 1060
3
AC3
SOFTWARE
ASP A:958 , CYS A:959 , TYR A:960 , HOH A:2218
BINDING SITE FOR RESIDUE GOL A 1539
4
AC4
SOFTWARE
LYS A:347 , GLU A:350 , GLU A:624
BINDING SITE FOR RESIDUE GOL A 1540
5
AC5
SOFTWARE
LYS A:363 , ARG A:885 , TYR A:898 , THR A:899 , ASP A:900 , ASP A:923 , GLY A:925
BINDING SITE FOR RESIDUE GOL A 1541
6
AC6
SOFTWARE
ASP A:142 , ARG A:157 , SER A:159 , TYR A:328
BINDING SITE FOR RESIDUE GOL A 1542
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (685 KB)
Header - Asym.Unit
Biol.Unit 1 (179 KB)
Header - Biol.Unit 1
Biol.Unit 2 (176 KB)
Header - Biol.Unit 2
Biol.Unit 3 (179 KB)
Header - Biol.Unit 3
Biol.Unit 4 (176 KB)
Header - Biol.Unit 4
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