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2X2H
Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (376 KB)
Biol.Unit 2 (372 KB)
Biol.Unit 3 (373 KB)
Biol.Unit 4 (376 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GRACILARIOPSIS LEMANEIFORMIS ALPHA-1,4-GLUCAN LYASE
Authors
:
H. J. Rozeboom, S. Yu, S. Madrid, K. H. Kalk, B. W. Dijkstra
Date
:
13 Jan 10 (Deposition) - 19 Jan 11 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Lyase, Anhydrofructose Pathway, Glycoside Hydrolase Family 31, Starch Binding Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Rozeboom, S. Yu, S. Madrid, K. H. Kalk, R. Zhang, B. W. Dijkstra
Crystal Structure Of Alpha-1, 4-Glucan Lyase, A Unique Glycoside Hydrolase Family Member With A Novel Catalytic Mechanism.
J. Biol. Chem. V. 288 26764 2013
[
close entry info
]
Hetero Components
(4, 31)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: S-HYDROXYCYSTEINE (CSOa)
3b: S-HYDROXYCYSTEINE (CSOb)
3c: S-HYDROXYCYSTEINE (CSOc)
3d: S-HYDROXYCYSTEINE (CSOd)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
9
Ligand/Ion
ACETATE ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
CSO
4
Mod. Amino Acid
S-HYDROXYCYSTEINE
4
GOL
16
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:239 , ASP A:512 , MET A:554 , ARG A:649 , ASP A:665 , GOL A:2041 , ACT A:2049 , HOH A:4029
BINDING SITE FOR RESIDUE GOL A2039
02
AC2
SOFTWARE
VAL A:556 , THR A:591 , TYR A:592 , PRO A:594 , MET A:611 , ARG A:615 , HIS A:618 , HOH A:3655
BINDING SITE FOR RESIDUE GOL A2040
03
AC3
SOFTWARE
PHE A:373 , ASP A:412 , ASN A:459 , TYR A:513 , ASP A:553 , PHE A:698 , HIS A:731 , GOL A:2039 , HOH A:3524
BINDING SITE FOR RESIDUE GOL A2041
04
AC4
SOFTWARE
LYS A:363 , ARG A:885 , TYR A:898 , THR A:899 , ASP A:900 , GLY A:925 , HOH A:4030 , HOH A:4031
BINDING SITE FOR RESIDUE GOL A2042
05
AC5
SOFTWARE
MET A:792 , ASN A:794 , TYR A:815 , ARG A:877
BINDING SITE FOR RESIDUE GOL A2043
06
AC6
SOFTWARE
THR A:828 , GLN A:869 , HOH A:3719 , HOH A:4032 , HOH A:4033 , HOH A:4034 , SER D:977
BINDING SITE FOR RESIDUE GOL A2044
07
AC7
SOFTWARE
GLY A:32 , PHE A:33 , SER A:34 , ALA A:192 , GLN A:318 , HOH A:3255 , HOH A:4035 , HOH A:4036
BINDING SITE FOR RESIDUE GOL A2045
08
AC8
SOFTWARE
GLY A:986 , SER A:989 , HOH A:3986
BINDING SITE FOR RESIDUE ACT A2046
09
AC9
SOFTWARE
ASN A:468 , GLN A:471 , TYR A:473 , ASN A:476 , GLN A:477 , HOH A:3533
BINDING SITE FOR RESIDUE ACT A2047
10
BC1
SOFTWARE
PHE A:843 , GLY A:844 , PRO A:845 , ASP A:846 , SER A:870 , GLU A:871 , SER A:872
BINDING SITE FOR RESIDUE ACT A2048
11
BC2
SOFTWARE
ASP A:239 , GLN A:245 , LYS A:590 , GOL A:2039 , HOH A:4038
BINDING SITE FOR RESIDUE ACT A2049
12
BC3
SOFTWARE
THR A:555 , VAL A:556 , ARG A:649
BINDING SITE FOR RESIDUE CL A2050
13
BC4
SOFTWARE
LYS B:363 , ARG B:885 , TYR B:898 , THR B:899 , ASP B:900 , GLY B:925
BINDING SITE FOR RESIDUE GOL B2039
14
BC5
SOFTWARE
MET B:792 , TYR B:793 , ASN B:794 , ARG B:877 , HOH B:3792
BINDING SITE FOR RESIDUE GOL B2040
15
BC6
SOFTWARE
ASP B:412 , VAL B:413 , ASN B:459 , ASP B:553 , ASP B:665 , PHE B:698 , HIS B:731 , HOH B:3415
BINDING SITE FOR RESIDUE GOL B2041
16
BC7
SOFTWARE
TYR B:266 , THR B:555 , VAL B:556 , ARG B:649 , HOH B:3416
BINDING SITE FOR RESIDUE CL B2042
17
BC8
SOFTWARE
LYS C:363 , ARG C:885 , THR C:899 , ASP C:900 , ASP C:923 , GLY C:925 , HOH C:3636 , HOH C:3864
BINDING SITE FOR RESIDUE GOL C2039
18
BC9
SOFTWARE
MET C:792 , TYR C:793 , ASN C:794 , ASP C:813 , TYR C:815 , ARG C:877 , HOH C:3653 , HOH C:3865 , HOH C:3866
BINDING SITE FOR RESIDUE GOL C2040
19
CC1
SOFTWARE
ASP C:412 , ASP C:553 , MET C:554 , ASP C:665 , PHE C:698 , HOH C:3474 , HOH C:3867
BINDING SITE FOR RESIDUE GOL C2041
20
CC2
SOFTWARE
ASP C:239 , ASP C:512
BINDING SITE FOR RESIDUE ACT C2042
21
CC3
SOFTWARE
ASP C:239 , GLN C:245 , LYS C:590 , HOH C:3169 , HOH C:3215
BINDING SITE FOR RESIDUE ACT C2043
22
CC4
SOFTWARE
TYR C:238 , TYR C:266 , THR C:555 , VAL C:556 , ARG C:649 , GLY C:650 , HOH C:3214
BINDING SITE FOR RESIDUE ACT C2044
23
CC5
SOFTWARE
MET D:792 , TYR D:793 , ASN D:794 , TYR D:815 , ARG D:877 , HOH D:3741 , HOH D:3988
BINDING SITE FOR RESIDUE GOL D2039
24
CC6
SOFTWARE
LYS D:363 , ARG D:885 , TYR D:898 , THR D:899 , ASP D:900 , GLY D:925 , HOH D:3989 , HOH D:3990
BINDING SITE FOR RESIDUE GOL D2040
25
CC7
SOFTWARE
ASP D:239 , LEU D:241 , GLN D:245 , LYS D:590 , HOH D:3280 , HOH D:3992
BINDING SITE FOR RESIDUE GOL D2041
26
CC8
SOFTWARE
GLY D:32 , SER D:34
BINDING SITE FOR RESIDUE ACT D2042
27
CC9
SOFTWARE
TYR D:238 , TYR D:266 , THR D:555 , VAL D:556 , ARG D:649 , GLY D:650 , HOH D:3278
BINDING SITE FOR RESIDUE ACT D2043
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (376 KB)
Header - Biol.Unit 1
Biol.Unit 2 (372 KB)
Header - Biol.Unit 2
Biol.Unit 3 (373 KB)
Header - Biol.Unit 3
Biol.Unit 4 (376 KB)
Header - Biol.Unit 4
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