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2X1Z
Biol. Unit 1
Info
Asym.Unit (45 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
STRUCTURE OF PERIDININ-CHLOROPHYLL-PROTEIN RECONSTITUTED WITH CHL-D
Authors
:
T. Schulte, R. G. Hiller, E. Hofmann
Date
:
09 Jan 10 (Deposition) - 09 Feb 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : M
Biol. Unit 1: M (2x)
Keywords
:
Light-Harvesting Polypeptide, Light Harvesting Protein, Alpha Helical, Photosynthesis, Transit Peptide, Chromophore, Chloroplast, Carotenoids
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Schulte, R. G. Hiller, E. Hofmann
X-Ray Structures Of The Peridinin-Chlorophyll- Protein Reconstituted With Different Chlorophylls.
Febs Lett. V. 584 973 2010
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
2a: CHLOROPHYLL D (CL7a)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDa)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
7a: PERIDININ (PIDa)
7b: PERIDININ (PIDb)
7c: PERIDININ (PIDc)
7d: PERIDININ (PIDd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
2
CL7
2
Ligand/Ion
CHLOROPHYLL D
4
DGD
2
Ligand/Ion
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
5
NA
-1
Ligand/Ion
SODIUM ION
6
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PID
8
Ligand/Ion
PERIDININ
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE M:17 , ILE M:48 , ALA M:62 , ALA M:63 , HIS M:66 , LEU M:92 , ALA M:132 , PHE M:139 , PID M:611 , PID M:612 , PID M:613 , PID M:614 , DGD M:1152 , HOH M:2116
BINDING SITE FOR RESIDUE CL7 M1151
02
AC2
SOFTWARE
PHE M:17 , TRP M:23 , PHE M:28 , LEU M:29 , LEU M:35 , PRO M:37 , ALA M:40 , PRO M:120 , ALA M:121 , MET M:123 , LYS M:124 , ALA M:132 , TYR M:136 , CL7 M:1151 , DGD M:1152 , HOH M:2202 , HOH M:2203 , HOH M:2204 , HOH M:2205
BINDING SITE FOR RESIDUE PID M 611
03
AC3
SOFTWARE
ILE M:27 , PHE M:28 , GLN M:30 , ALA M:31 , ILE M:44 , MET M:47 , VAL M:119 , TYR M:122 , MET M:123 , PID M:613 , CL7 M:1151 , DGD M:1152
BINDING SITE FOR RESIDUE PID M 612
04
AC4
SOFTWARE
MET M:47 , LEU M:59 , VAL M:104 , VAL M:107 , TYR M:108 , LYS M:118 , ALA M:121 , LEU M:140 , PID M:612 , PID M:614 , CL7 M:1151 , DGD M:1152 , HOH M:2184 , HOH M:2213
BINDING SITE FOR RESIDUE PID M 613
05
AC5
SOFTWARE
TRP M:23 , LEU M:41 , ALA M:69 , ILE M:70 , GLY M:78 , VAL M:79 , THR M:80 , TRP M:85 , VAL M:88 , ASN M:89 , LEU M:92 , GLU M:101 , PHE M:139 , LYS M:143 , VAL M:146 , PID M:613 , CL7 M:1151 , HOH M:2053 , HOH M:2206 , HOH M:2207 , HOH M:2208
BINDING SITE FOR RESIDUE PID M 614
06
AC6
SOFTWARE
MET M:47 , TYR M:108 , VAL M:111 , SER M:112 , PRO M:120 , GLU M:133 , TYR M:136 , GLU M:137 , LEU M:140 , PID M:611 , PID M:612 , PID M:613 , CL7 M:1151 , HOH M:2166 , HOH M:2184 , HOH M:2203 , HOH M:2209 , HOH M:2211 , HOH M:2212 , HOH M:2213
BINDING SITE FOR RESIDUE DGD M1152
07
AC7
SOFTWARE
GLU M:2 , ASP M:5 , HOH M:2011 , HOH M:2013 , HOH M:2021 , HOH M:2028 , HOH M:2046
BINDING SITE FOR RESIDUE CD M1171
08
AC8
SOFTWARE
ASP M:5 , ASP M:22 , CL M:1161 , HOH M:2007 , HOH M:2047
BINDING SITE FOR RESIDUE CD M1172
09
AC9
SOFTWARE
ASN M:102 , ASP M:106 , HOH M:2093 , HOH M:2148
BINDING SITE FOR RESIDUE CD M1173
10
BC1
SOFTWARE
MET M:105 , ASP M:109 , ASP M:116 , CL M:1167 , HOH M:2154 , HOH M:2156
BINDING SITE FOR RESIDUE CD M1174
11
BC2
SOFTWARE
GLU M:39 , CL M:1162 , HOH M:2080 , HOH M:2160
BINDING SITE FOR RESIDUE CD M1175
12
BC3
SOFTWARE
GLU M:39 , HOH M:2080 , HOH M:2085
BINDING SITE FOR RESIDUE CD M1176
13
BC4
SOFTWARE
ALA M:0 , ASP M:22 , ASN M:25 , CD M:1172
BINDING SITE FOR RESIDUE CL M1161
14
BC5
SOFTWARE
GLN M:36 , PRO M:37 , LEU M:38 , GLU M:39 , CD M:1175
BINDING SITE FOR RESIDUE CL M1162
15
BC6
SOFTWARE
ASP M:55 , NA M:1163 , HOH M:2103
BINDING SITE FOR RESIDUE CL M1166
16
BC7
SOFTWARE
MET M:105 , ASP M:116 , CD M:1174
BINDING SITE FOR RESIDUE CL M1167
17
BC8
SOFTWARE
ASP M:55 , CL M:1166 , HOH M:2102 , HOH M:2103
BINDING SITE FOR RESIDUE NA M1163
18
BC9
SOFTWARE
LYS M:68 , ASP M:84 , HOH M:2127
BINDING SITE FOR RESIDUE NA M1164
19
CC1
SOFTWARE
ALA M:0 , ASP M:1 , GLU M:20 , ARG M:94 , HOH M:2214
BINDING SITE FOR RESIDUE PEG M1165
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PCP_2x1zM01 (M:1-146)
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Clans
(
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)
(
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Organisms
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)
(
)
Clan
:
no clan defined [family: PCP]
(3)
Family
:
PCP
(3)
Amphidinium carterae (Dinoflagellate)
(3)
1a
PCP-2x1zM01
M:1-146
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Chain M
Asymmetric Unit 1
Asymmetric Unit 2
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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