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2X17
Asym. Unit
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Asym.Unit (670 KB)
Biol.Unit 1 (664 KB)
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(1)
Title
:
THE X-RAY STRUCTURE OF FERRITIN FROM PYROCOCCUS FURIOSUS LOADED WITH AG(I)
Authors
:
A. Ilari, A. Fiorillo, P. Ceci
Date
:
22 Dec 09 (Deposition) - 21 Apr 10 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : G,H,I,J,K,L,M,N,O,P,Q,R,Y,Z,0,1,2,3,4,5,6,7,8,9
Biol. Unit 1: G,H,I,J,K,L,M,N,O,P,Q,R,Y,Z,0,1,2,3,4,5,6,7,8,9 (1x)
Keywords
:
Ferritin, Nano-Particles, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Kasyutich, A. Ilari, A. Fiorillo, D. Tatchev, A. Hoell, P. Ceci
Silver Ion Incorporation And Nanoparticle Formation Inside The Cavity Of Pyrococcus Furiosus Ferritin: Structural And Size-Distribution Analyses.
J. Am. Chem. Soc. V. 132 3621 2010
[
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Hetero Components
(1, 33)
Info
All Hetero Components
1a: SILVER ION (AGa)
1aa: SILVER ION (AGaa)
1ab: SILVER ION (AGab)
1ac: SILVER ION (AGac)
1ad: SILVER ION (AGad)
1ae: SILVER ION (AGae)
1af: SILVER ION (AGaf)
1ag: SILVER ION (AGag)
1b: SILVER ION (AGb)
1c: SILVER ION (AGc)
1d: SILVER ION (AGd)
1e: SILVER ION (AGe)
1f: SILVER ION (AGf)
1g: SILVER ION (AGg)
1h: SILVER ION (AGh)
1i: SILVER ION (AGi)
1j: SILVER ION (AGj)
1k: SILVER ION (AGk)
1l: SILVER ION (AGl)
1m: SILVER ION (AGm)
1n: SILVER ION (AGn)
1o: SILVER ION (AGo)
1p: SILVER ION (AGp)
1q: SILVER ION (AGq)
1r: SILVER ION (AGr)
1s: SILVER ION (AGs)
1t: SILVER ION (AGt)
1u: SILVER ION (AGu)
1v: SILVER ION (AGv)
1w: SILVER ION (AGw)
1x: SILVER ION (AGx)
1y: SILVER ION (AGy)
1z: SILVER ION (AGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AG
33
Ligand/Ion
SILVER ION
[
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Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET 3:153 , MET 9:153 , MET K:153 , MET Q:153
BINDING SITE FOR RESIDUE AG 31172
02
AC2
SOFTWARE
GLU 7:49 , HIS 7:53 , HOH 7:2001 , MET P:170
BINDING SITE FOR RESIDUE AG 71173
03
AC3
SOFTWARE
GLU 1:49 , HIS 1:53 , HOH 1:2001 , MET J:170
BINDING SITE FOR RESIDUE AG 11173
04
AC4
SOFTWARE
MET 1:153 , MET 7:153 , MET I:153 , MET O:153
BINDING SITE FOR RESIDUE AG 11174
05
AC5
SOFTWARE
MET 1:170 , GLU J:49 , HIS J:53
BINDING SITE FOR RESIDUE AG J1173
06
AC6
SOFTWARE
MET G:170 , GLU Y:49 , HIS Y:53 , GLU Y:126 , HOH Y:2001
BINDING SITE FOR RESIDUE AG Y1171
07
AC7
SOFTWARE
GLU 4:49 , HIS 4:53 , MET M:170
BINDING SITE FOR RESIDUE AG 41173
08
AC8
SOFTWARE
GLU 9:49 , HIS 9:53 , GLU 9:126 , MET R:170
BINDING SITE FOR RESIDUE AG 91172
09
AC9
SOFTWARE
GLU 5:49 , HIS 5:53 , MET N:170
BINDING SITE FOR RESIDUE AG 51173
10
BC1
SOFTWARE
GLU 3:49 , HIS 3:53 , HOH 3:2002 , MET L:170
BINDING SITE FOR RESIDUE AG 31173
11
BC2
SOFTWARE
GLU 2:49 , HIS 2:53 , HOH 2:2001 , MET K:170
BINDING SITE FOR RESIDUE AG 21172
12
BC3
SOFTWARE
GLU 8:49 , HIS 8:53 , HOH 8:2001 , MET Q:170
BINDING SITE FOR RESIDUE AG 81173
13
BC4
SOFTWARE
MET H:170 , GLU Z:49 , HIS Z:53 , HOH Z:2001
BINDING SITE FOR RESIDUE AG Z1173
14
BC5
SOFTWARE
MET 0:170 , GLU I:49 , HIS I:53 , HOH I:2002
BINDING SITE FOR RESIDUE AG I1173
15
BC6
SOFTWARE
MET 6:170 , GLU O:49 , HIS O:53 , GLU O:126 , HOH O:2001
BINDING SITE FOR RESIDUE AG O1171
16
BC7
SOFTWARE
GLU G:49 , HIS G:53 , GLU G:126 , MET Y:170
BINDING SITE FOR RESIDUE AG G1172
17
BC8
SOFTWARE
MET 7:170 , GLU P:49 , HIS P:53 , HOH P:2002
BINDING SITE FOR RESIDUE AG P1171
18
BC9
SOFTWARE
GLU H:49 , HIS H:53 , MET Z:170
BINDING SITE FOR RESIDUE AG H1173
19
CC1
SOFTWARE
MET 8:170 , GLU Q:49 , HIS Q:53
BINDING SITE FOR RESIDUE AG Q1173
20
CC2
SOFTWARE
MET 2:170 , GLU K:49 , HIS K:53 , HOH K:2001
BINDING SITE FOR RESIDUE AG K1172
21
CC3
SOFTWARE
MET 3:170 , GLU L:49 , HIS L:53 , HOH L:2001
BINDING SITE FOR RESIDUE AG L1173
22
CC4
SOFTWARE
MET 0:153 , MET 2:153 , MET G:153 , MET H:153
BINDING SITE FOR RESIDUE AG G1173
23
CC5
SOFTWARE
MET 5:170 , GLU N:49 , HIS N:53 , HOH N:2002
BINDING SITE FOR RESIDUE AG N1171
24
CC6
SOFTWARE
MET 9:170 , GLU R:49 , HIS R:53
BINDING SITE FOR RESIDUE AG R1172
25
CC7
SOFTWARE
MET 4:170 , GLU M:49 , HIS M:53 , GLU M:126
BINDING SITE FOR RESIDUE AG M1171
26
CC8
SOFTWARE
GLU 0:49 , HIS 0:53 , MET I:170
BINDING SITE FOR RESIDUE AG 01172
27
CC9
SOFTWARE
GLU 6:49 , HIS 6:53 , GLU 6:126 , MET O:170
BINDING SITE FOR RESIDUE AG 61172
28
DC1
SOFTWARE
MET 5:153 , MET J:153 , MET L:153 , MET Y:153
BINDING SITE FOR RESIDUE AG 51174
29
DC2
SOFTWARE
MET 4:153 , MET P:153 , MET R:153 , MET Z:153
BINDING SITE FOR RESIDUE AG 41174
30
DC3
SOFTWARE
MET 6:153 , MET 8:153 , MET M:153 , MET N:153
BINDING SITE FOR RESIDUE AG 61173
31
DC4
SOFTWARE
HIS M:93 , PHE M:96 , GLU N:110
BINDING SITE FOR RESIDUE AG M1172
32
DC5
SOFTWARE
MET 3:1 , ASN 3:65 , TYR Y:91
BINDING SITE FOR RESIDUE AG 31174
33
DC6
SOFTWARE
MET 7:1
BINDING SITE FOR RESIDUE AG 11175
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d2x170_ (0:)
1b: SCOP_d2x171_ (1:)
1c: SCOP_d2x172_ (2:)
1d: SCOP_d2x173_ (3:)
1e: SCOP_d2x174_ (4:)
1f: SCOP_d2x175_ (5:)
1g: SCOP_d2x176_ (6:)
1h: SCOP_d2x177_ (7:)
1i: SCOP_d2x178_ (8:)
1j: SCOP_d2x179_ (9:)
1k: SCOP_d2x17g_ (G:)
1l: SCOP_d2x17h_ (H:)
1m: SCOP_d2x17i_ (I:)
1n: SCOP_d2x17j_ (J:)
1o: SCOP_d2x17k_ (K:)
1p: SCOP_d2x17l_ (L:)
1q: SCOP_d2x17m_ (M:)
1r: SCOP_d2x17n_ (N:)
1s: SCOP_d2x17o_ (O:)
1t: SCOP_d2x17p_ (P:)
1u: SCOP_d2x17q_ (Q:)
1v: SCOP_d2x17r_ (R:)
1w: SCOP_d2x17y_ (Y:)
1x: SCOP_d2x17z_ (Z:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Pyrococcus furiosus [TaxId: 2261]
(4)
1a
d2x170_
0:
1b
d2x171_
1:
1c
d2x172_
2:
1d
d2x173_
3:
1e
d2x174_
4:
1f
d2x175_
5:
1g
d2x176_
6:
1h
d2x177_
7:
1i
d2x178_
8:
1j
d2x179_
9:
1k
d2x17g_
G:
1l
d2x17h_
H:
1m
d2x17i_
I:
1n
d2x17j_
J:
1o
d2x17k_
K:
1p
d2x17l_
L:
1q
d2x17m_
M:
1r
d2x17n_
N:
1s
d2x17o_
O:
1t
d2x17p_
P:
1u
d2x17q_
Q:
1v
d2x17r_
R:
1w
d2x17y_
Y:
1x
d2x17z_
Z:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_2x17M00 (M:1-170)
1b: CATH_2x17N00 (N:1-170)
1c: CATH_2x17O00 (O:1-170)
1d: CATH_2x17P00 (P:1-170)
1e: CATH_2x17Y00 (Y:1-170)
1f: CATH_2x17000 (_:1-171)
1g: CATH_2x17200 (2:1-171)
1h: CATH_2x17300 (3:1-171)
1i: CATH_2x17600 (6:1-171)
1j: CATH_2x17900 (9:1-171)
1k: CATH_2x17G00 (G:1-171)
1l: CATH_2x17K00 (K:1-171)
1m: CATH_2x17R00 (R:1-171)
1n: CATH_2x17100 (1:1-172)
1o: CATH_2x17400 (4:1-172)
1p: CATH_2x17500 (5:1-172)
1q: CATH_2x17700 (7:1-172)
1r: CATH_2x17800 (8:1-172)
1s: CATH_2x17H00 (H:1-172)
1t: CATH_2x17I00 (I:1-172)
1u: CATH_2x17J00 (J:1-172)
1v: CATH_2x17L00 (L:1-172)
1w: CATH_2x17Q00 (Q:1-172)
1x: CATH_2x17Z00 (Z:1-172)
View:
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Classes
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Pyrococcus furiosus. Organism_taxid: 2261.
(6)
1a
2x17M00
M:1-170
1b
2x17N00
N:1-170
1c
2x17O00
O:1-170
1d
2x17P00
P:1-170
1e
2x17Y00
Y:1-170
1f
2x17000
_:1-171
1g
2x17200
2:1-171
1h
2x17300
3:1-171
1i
2x17600
6:1-171
1j
2x17900
9:1-171
1k
2x17G00
G:1-171
1l
2x17K00
K:1-171
1m
2x17R00
R:1-171
1n
2x17100
1:1-172
1o
2x17400
4:1-172
1p
2x17500
5:1-172
1q
2x17700
7:1-172
1r
2x17800
8:1-172
1s
2x17H00
H:1-172
1t
2x17I00
I:1-172
1u
2x17J00
J:1-172
1v
2x17L00
L:1-172
1w
2x17Q00
Q:1-172
1x
2x17Z00
Z:1-172
[
close CATH info
]
Pfam Domains
(1, 24)
Info
all PFAM domains
1a: PFAM_Ferritin_2x17Z01 (Z:7-144)
1b: PFAM_Ferritin_2x17Z02 (Z:7-144)
1c: PFAM_Ferritin_2x17Z03 (Z:7-144)
1d: PFAM_Ferritin_2x17Z04 (Z:7-144)
1e: PFAM_Ferritin_2x17Z05 (Z:7-144)
1f: PFAM_Ferritin_2x17Z06 (Z:7-144)
1g: PFAM_Ferritin_2x17Z07 (Z:7-144)
1h: PFAM_Ferritin_2x17Z08 (Z:7-144)
1i: PFAM_Ferritin_2x17Z09 (Z:7-144)
1j: PFAM_Ferritin_2x17Z10 (Z:7-144)
1k: PFAM_Ferritin_2x17Z11 (Z:7-144)
1l: PFAM_Ferritin_2x17Z12 (Z:7-144)
1m: PFAM_Ferritin_2x17Z13 (Z:7-144)
1n: PFAM_Ferritin_2x17Z14 (Z:7-144)
1o: PFAM_Ferritin_2x17Z15 (Z:7-144)
1p: PFAM_Ferritin_2x17Z16 (Z:7-144)
1q: PFAM_Ferritin_2x17Z17 (Z:7-144)
1r: PFAM_Ferritin_2x17Z18 (Z:7-144)
1s: PFAM_Ferritin_2x17Z19 (Z:7-144)
1t: PFAM_Ferritin_2x17Z20 (Z:7-144)
1u: PFAM_Ferritin_2x17Z21 (Z:7-144)
1v: PFAM_Ferritin_2x17Z22 (Z:7-144)
1w: PFAM_Ferritin_2x17Z23 (Z:7-144)
1x: PFAM_Ferritin_2x17Z24 (Z:7-144)
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Organisms
(
)
(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
Ferritin-2x17Z01
Z:7-144
1b
Ferritin-2x17Z02
Z:7-144
1c
Ferritin-2x17Z03
Z:7-144
1d
Ferritin-2x17Z04
Z:7-144
1e
Ferritin-2x17Z05
Z:7-144
1f
Ferritin-2x17Z06
Z:7-144
1g
Ferritin-2x17Z07
Z:7-144
1h
Ferritin-2x17Z08
Z:7-144
1i
Ferritin-2x17Z09
Z:7-144
1j
Ferritin-2x17Z10
Z:7-144
1k
Ferritin-2x17Z11
Z:7-144
1l
Ferritin-2x17Z12
Z:7-144
1m
Ferritin-2x17Z13
Z:7-144
1n
Ferritin-2x17Z14
Z:7-144
1o
Ferritin-2x17Z15
Z:7-144
1p
Ferritin-2x17Z16
Z:7-144
1q
Ferritin-2x17Z17
Z:7-144
1r
Ferritin-2x17Z18
Z:7-144
1s
Ferritin-2x17Z19
Z:7-144
1t
Ferritin-2x17Z20
Z:7-144
1u
Ferritin-2x17Z21
Z:7-144
1v
Ferritin-2x17Z22
Z:7-144
1w
Ferritin-2x17Z23
Z:7-144
1x
Ferritin-2x17Z24
Z:7-144
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