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Asym. Unit
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Asym.Unit (167 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLETE EPHA2 ECTODOMAIN
Authors
:
E. Seiradake, K. Harlos, G. Sutton, A. R. Aricescu, E. Y. Jones
Date
:
21 Dec 09 (Deposition) - 16 Mar 10 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Angiogenesis, Kinase, Cataract, Receptor, Apoptosis, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Seiradake, K. Harlos, G. Sutton, A. R. Aricescu, E. Y. Jones
An Extracellular Steric Seeding Mechanism For Eph- Ephrin Signalling Platform Assembly
Nat. Struct. Mol. Biol. V. 17 398 2010
[
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]
Hetero Components
(3, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:93 , GLY A:171
BINDING SITE FOR RESIDUE CL A1530
2
AC2
SOFTWARE
ASN A:407 , SER A:433 , ASP A:500 , THR A:501 , GLN A:525
BINDING SITE FOR RESIDUE NAG A1531
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_055989 (K99N, chain A, )
2: VAR_042121 (G391R, chain A, )
3: VAR_042122 (T511M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_055989
K
99
N
EPHA2_HUMAN
Polymorphism
1058372
A
K
99
N
2
UniProt
VAR_042121
G
391
R
EPHA2_HUMAN
Polymorphism
34192549
A
G
391
R
3
UniProt
VAR_042122
T
511
M
EPHA2_HUMAN
Polymorphism
55747232
A
T
511
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 5)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (A:28-206)
2: RECEPTOR_TYR_KIN_V_1 (A:182-202)
3: RECEPTOR_TYR_KIN_V_2 (A:247-267)
4: FN3 (A:438-529|A:328-432)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHA2_HUMAN
28-206
1
A:28-206
2
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHA2_HUMAN
182-202
1
A:182-202
3
RECEPTOR_TYR_KIN_V_2
PS00791
Receptor tyrosine kinase class V signature 2.
EPHA2_HUMAN
247-267
1
A:247-267
4
FN3
PS50853
Fibronectin type-III domain profile.
EPHA2_HUMAN
438-529
328-432
2
A:438-529
A:328-432
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.1a (A:26-29)
Exon 1.2 (A:29-51 (gaps))
Exon 1.3 (A:52-275 (gaps))
Exon 1.5 (A:275-327)
Exon 1.6 (A:327-438 (gaps))
Exon 1.7 (A:438-476)
Exon 1.8 (A:477-528)
Exon 1.9b (A:528-529)
View:
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Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9b
9: Boundary 1.9b/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358432
1a
ENSE00001954971
chr1:
16482582-16482343
240
EPHA2_HUMAN
1-29
29
1
A:26-29
4
1.2
ENST00000358432
2
ENSE00000827996
chr1:
16477458-16477391
68
EPHA2_HUMAN
29-51
23
1
A:29-51 (gaps)
23
1.3
ENST00000358432
3
ENSE00001031821
chr1:
16475542-16474873
670
EPHA2_HUMAN
52-275
224
1
A:52-275 (gaps)
224
1.5
ENST00000358432
5
ENSE00000827994
chr1:
16464925-16464770
156
EPHA2_HUMAN
275-327
53
1
A:275-327
53
1.6
ENST00000358432
6
ENSE00000955420
chr1:
16464680-16464348
333
EPHA2_HUMAN
327-438
112
1
A:327-438 (gaps)
112
1.7
ENST00000358432
7
ENSE00000955397
chr1:
16462265-16462150
116
EPHA2_HUMAN
438-476
39
1
A:438-476
39
1.8
ENST00000358432
8
ENSE00001031787
chr1:
16461684-16461531
154
EPHA2_HUMAN
477-528
52
1
A:477-528
52
1.9b
ENST00000358432
9b
ENSE00001031795
chr1:
16461062-16460963
100
EPHA2_HUMAN
528-561
34
1
A:528-529
2
1.10
ENST00000358432
10
ENSE00000955400
chr1:
16460410-16460355
56
EPHA2_HUMAN
561-580
20
0
-
-
1.11a
ENST00000358432
11a
ENSE00001031771
chr1:
16460101-16459976
126
EPHA2_HUMAN
580-622
43
0
-
-
1.12a
ENST00000358432
12a
ENSE00000955402
chr1:
16459863-16459675
189
EPHA2_HUMAN
622-685
64
0
-
-
1.13
ENST00000358432
13
ENSE00000955403
chr1:
16458934-16458873
62
EPHA2_HUMAN
685-705
21
0
-
-
1.14
ENST00000358432
14
ENSE00000955404
chr1:
16458768-16458559
210
EPHA2_HUMAN
706-775
70
0
-
-
1.15
ENST00000358432
15
ENSE00000955405
chr1:
16458365-16458216
150
EPHA2_HUMAN
776-825
50
0
-
-
1.16
ENST00000358432
16
ENSE00000955406
chr1:
16456914-16456721
194
EPHA2_HUMAN
826-890
65
0
-
-
1.17
ENST00000358432
17
ENSE00001031824
chr1:
16456084-16455929
156
EPHA2_HUMAN
890-942
53
0
-
-
1.18b
ENST00000358432
18b
ENSE00001840165
chr1:
16451815-16450832
984
EPHA2_HUMAN
942-976
35
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_fn3_2x10A01 (A:437-519)
1b: PFAM_fn3_2x10A02 (A:437-519)
2a: PFAM_Ephrin_lbd_2x10A03 (A:28-201)
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(
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)
(
)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-2x10A01
A:437-519
1b
fn3-2x10A02
A:437-519
Clan
:
GBD
(153)
Family
:
Ephrin_lbd
(12)
Homo sapiens (Human)
(9)
2a
Ephrin_lbd-2x10A03
A:28-201
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Chain A
Asymmetric Unit 1
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