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2WZS
Biol. Unit 4
Info
Asym.Unit (996 KB)
Biol.Unit 1 (138 KB)
Biol.Unit 2 (138 KB)
Biol.Unit 3 (137 KB)
Biol.Unit 4 (139 KB)
Biol.Unit 5 (135 KB)
Biol.Unit 6 (134 KB)
Biol.Unit 7 (131 KB)
Biol.Unit 8 (132 KB)
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(1)
Title
:
STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 IN COMPLEX WITH MANNOIMIDAZOLE
Authors
:
Y. Zhu, M. D. L. Suits, A. Thompson, S. Chavan, Z. Dinev, C. Dumon, N. Smith, K. W. Moremen, Y. Xiang, A. Siriwardena, S. J. Williams, H. J. Gilbert, G. J. Davies
Date
:
02 Dec 09 (Deposition) - 29 Dec 09 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Glycoside Hydrolase Family 92, Alpha-1, 2 Linkage, Bt3990, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhu, M. D. L. Suits, A. Thompson, S. Chavan, Z. Dinev, C. Dumon, N. Smith, K. W. Moremen, Y. Xiang, A. Siriwardena, S. J. Williams, H. J. Gilbert, G. J. Davies
Mechanistic Insights Into A Ca2+-Dependent Family Of A-Mannosidases In A Human Gut Symbiont.
Nat. Chem. Biol. V. 6 125 2010
[
close entry info
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLa)
3b: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLb)
3c: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLc)
3d: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLd)
3e: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLe)
3f: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLf)
3g: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLg)
3h: (5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(... (MVLh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
MVL
1
Ligand/Ion
(5R,6R,7S,8R)-6,7,8-TRIHYDROXY-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDRO-1H-IMIDAZO[1,2-A]PYRIDIN-4-IUM
[
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Sites
(6, 6)
Info
All Sites
1: BC9 (SOFTWARE)
2: CC1 (SOFTWARE)
3: CC2 (SOFTWARE)
4: CC3 (SOFTWARE)
5: CC4 (SOFTWARE)
6: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC9
SOFTWARE
ASN D:601 , GLN D:602 , ASP D:644 , MVL D:801 , HOH D:2236 , HOH D:2259 , HOH D:2261
BINDING SITE FOR RESIDUE CA D 800
2
CC1
SOFTWARE
SER D:86 , TRP D:88 , TRP D:347 , ASP D:348 , TRP D:385 , CYS D:393 , MET D:394 , GLU D:533 , GLU D:585 , ASN D:601 , GLN D:602 , ASP D:644 , CA D:800 , HOH D:2233 , HOH D:2258 , HOH D:2261
BINDING SITE FOR RESIDUE MVL D 801
3
CC2
SOFTWARE
ASN D:195 , LYS D:197 , TYR D:199 , ILE D:254 , VAL D:335 , HOH D:2101
BINDING SITE FOR RESIDUE GOL D 802
4
CC3
SOFTWARE
TYR D:622 , TYR D:702
BINDING SITE FOR RESIDUE GOL D 803
5
CC4
SOFTWARE
GLU D:272 , ALA D:275
BINDING SITE FOR RESIDUE GOL D 804
6
CC5
SOFTWARE
GLN D:284 , LYS D:288 , VAL D:364 , GLU D:684
BINDING SITE FOR RESIDUE GOL D 805
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_2wzsA02 (A:289-312,A:607-631,A:632-748)
1b: CATH_2wzsB02 (B:289-312,B:607-631,B:632-748)
1c: CATH_2wzsC02 (C:289-312,C:607-631,C:632-748)
1d: CATH_2wzsD02 (D:289-312,D:607-631,D:632-748)
1e: CATH_2wzsE02 (E:289-312,E:607-631,E:632-748)
1f: CATH_2wzsF02 (F:289-312,F:607-631,F:632-748)
1g: CATH_2wzsG02 (G:289-312,G:607-631,G:632-748)
1h: CATH_2wzsH02 (H:289-312,H:607-631,H:632-748)
2a: CATH_2wzsA03 (A:344-438)
2b: CATH_2wzsB03 (B:344-438)
2c: CATH_2wzsC03 (C:344-438)
2d: CATH_2wzsD03 (D:344-438)
2e: CATH_2wzsE03 (E:344-438)
2f: CATH_2wzsF03 (F:344-438)
2g: CATH_2wzsG03 (G:344-438)
2h: CATH_2wzsH03 (H:344-438)
3a: CATH_2wzsA01 (A:20-53,A:54-288,A:313-343)
3b: CATH_2wzsB01 (B:20-53,B:54-288,B:313-343)
3c: CATH_2wzsC01 (C:20-53,C:54-288,C:313-343)
3d: CATH_2wzsD01 (D:20-53,D:54-288,D:313-343)
3e: CATH_2wzsE01 (E:20-53,E:54-288,E:313-343)
3f: CATH_2wzsF01 (F:20-53,F:54-288,F:313-343)
3g: CATH_2wzsG01 (G:20-53,G:54-288,G:313-343)
3h: CATH_2wzsH01 (H:20-53,H:54-288,H:313-343)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GH92 mannosidase fold
(8)
Homologous Superfamily
:
GH92 mannosidase domain
(8)
Bacteroides thetaiotaomicron. Organism_taxid: 226186. Strain: vpi-5482.
(8)
1a
2wzsA02
A:289-312,A:607-631,A:632-748
1b
2wzsB02
B:289-312,B:607-631,B:632-748
1c
2wzsC02
C:289-312,C:607-631,C:632-748
1d
2wzsD02
D:289-312,D:607-631,D:632-748
1e
2wzsE02
E:289-312,E:607-631,E:632-748
1f
2wzsF02
F:289-312,F:607-631,F:632-748
1g
2wzsG02
G:289-312,G:607-631,G:632-748
1h
2wzsH02
H:289-312,H:607-631,H:632-748
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
alpha-1,2-mannosidase
(8)
Bacteroides thetaiotaomicron. Organism_taxid: 226186. Strain: vpi-5482.
(8)
2a
2wzsA03
A:344-438
2b
2wzsB03
B:344-438
2c
2wzsC03
C:344-438
2d
2wzsD03
D:344-438
2e
2wzsE03
E:344-438
2f
2wzsF03
F:344-438
2g
2wzsG03
G:344-438
2h
2wzsH03
H:344-438
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
[code=2.70.98.10, no name defined]
(116)
Bacteroides thetaiotaomicron. Organism_taxid: 226186. Strain: vpi-5482.
(8)
3a
2wzsA01
A:20-53,A:54-288,A:313-343
3b
2wzsB01
B:20-53,B:54-288,B:313-343
3c
2wzsC01
C:20-53,C:54-288,C:313-343
3d
2wzsD01
D:20-53,D:54-288,D:313-343
3e
2wzsE01
E:20-53,E:54-288,E:313-343
3f
2wzsF01
F:20-53,F:54-288,F:313-343
3g
2wzsG01
G:20-53,G:54-288,G:313-343
3h
2wzsH01
H:20-53,H:54-288,H:313-343
[
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Pfam Domains
(0, 0)
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