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2WZI
Asym. Unit
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Asym.Unit (489 KB)
Biol.Unit 1 (480 KB)
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(1)
Title
:
BTGH84 D243N IN COMPLEX WITH 5F-OXAZOLINE
Authors
:
Y. He, G. J. Davies
Date
:
30 Nov 09 (Deposition) - 26 Jan 10 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glycoside Hydrolase, Hydrolase, Inhibitor, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. He, M. S. Macauley, K. A. Stubbs, D. J. Vocadlo, G. J. Davies
Visualizing The Reaction Coordinate Of An O-Glcnac Hydrolase
J. Am. Chem. Soc. V. 132 1807 2010
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: (3AS,5S,6S,7R,7AR)-5-FLUORO-5-(HYD... (5FNa)
1b: (3AS,5S,6S,7R,7AR)-5-FLUORO-5-(HYD... (5FNb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5FN
2
Ligand/Ion
(3AS,5S,6S,7R,7AR)-5-FLUORO-5-(HYDROXYMETHYL)-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]OXAZOLE-6,7-DIOL
2
CA
2
Ligand/Ion
CALCIUM ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
NA
2
Ligand/Ion
SODIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:539 , ASP A:542 , ASP A:589 , HOH A:2579 , HOH A:2580 , HOH A:2581
BINDING SITE FOR RESIDUE GOL A1716
02
AC2
SOFTWARE
PHE B:539 , VAL B:554 , LYS B:555 , ASP B:589 , HOH B:2530 , HOH B:2531
BINDING SITE FOR RESIDUE GOL B1716
03
AC3
SOFTWARE
LEU B:178 , TYR B:356 , TRP B:400 , GLU B:438 , HOH B:2407 , HOH B:2532 , HOH B:2533
BINDING SITE FOR RESIDUE GOL B1717
04
AC4
SOFTWARE
GLU A:32 , GLU A:61 , ASP A:64
BINDING SITE FOR RESIDUE CA A1717
05
AC5
SOFTWARE
GLU B:32 , GLU B:61 , ASP B:64 , HOH B:2077
BINDING SITE FOR RESIDUE CA B1718
06
AC6
SOFTWARE
PRO A:430 , ASN A:431 , GLY A:434 , ARG A:436 , HOH A:2582 , HOH A:2583
BINDING SITE FOR RESIDUE GOL A1718
07
AC7
SOFTWARE
ASP B:168 , HOH B:2032 , HOH B:2044 , HOH B:2172
BINDING SITE FOR RESIDUE NA B1719
08
AC8
SOFTWARE
GLU B:494 , HOH B:2357 , HOH B:2358 , HOH B:2441
BINDING SITE FOR RESIDUE NA B1720
09
AC9
SOFTWARE
GLY A:135 , PHE A:136 , TYR A:137 , LYS A:166 , ASP A:242 , TYR A:282 , THR A:310 , VAL A:314 , ASN A:339 , VAL A:342 , ASP A:344 , TYR A:345 , ASN A:372 , HOH A:2584
BINDING SITE FOR RESIDUE 5FN A1719
10
BC1
SOFTWARE
GLY B:135 , PHE B:136 , TYR B:137 , LYS B:166 , ASP B:242 , TYR B:282 , VAL B:314 , ASN B:339 , VAL B:342 , ASP B:344 , ASN B:372 , HOH B:2534
BINDING SITE FOR RESIDUE 5FN B1721
11
BC2
SOFTWARE
PRO A:179 , TRP A:400 , HOH A:2266
BINDING SITE FOR RESIDUE GOL A1720
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NAGidase_2wziB01 (B:130-425)
1b: PFAM_NAGidase_2wziB02 (B:130-425)
2a: PFAM_Glyco_hydro_20b_2wziB03 (B:65-125)
2b: PFAM_Glyco_hydro_20b_2wziB04 (B:65-125)
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
NAGidase
(15)
Bacteroides thetaiotaomicron
(10)
1a
NAGidase-2wziB01
B:130-425
1b
NAGidase-2wziB02
B:130-425
Clan
:
no clan defined [family: Glyco_hydro_20b]
(22)
Family
:
Glyco_hydro_20b
(22)
Bacteroides thetaiotaomicron
(10)
2a
Glyco_hydro_20b-2wziB03
B:65-125
2b
Glyco_hydro_20b-2wziB04
B:65-125
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Asymmetric Unit 1
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Asym.Unit (489 KB)
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