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2WYN
Biol. Unit 2
Info
Asym.Unit (372 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (186 KB)
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(1)
Title
:
STRUCTURE OF FAMILY 37 TREHALASE FROM ESCHERICHIA COLI IN COMPLEX WITH A CASUARINE-6-O-A-D-GLUCOSIDE ANALOGUE
Authors
:
T. M. Gloster, S. M. Roberts, G. J. Davies, F. Cardona, A. Goti, C. Parmeg P. Parenti, P. Fusi, M. Forcella, L. Cipolla
Date
:
17 Nov 09 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Cardona, A. Goti, C. Parmeggiani, P. Parenti, M. Forcella, P. Fusi, L. Cipolla, S. M. Roberts, G. J. Davies, T. M. Gloster
Casuarine-6-O-Alpha-D-Glucoside And Its Analogues Are Tight Binding Inhibitors Of Insect And Bacterial Trehalases.
Chem. Commun. (Camb. ) V. 46 2629 2010
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
3a: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9a)
3b: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9b)
3c: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9c)
3d: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9d)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
3
LG9
2
Ligand/Ion
(1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDROXYMETHYL)HEXAHYDRO-1H-PYRROLIZINE-1,2,6-TRIOL
4
SO4
16
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: DC4 (SOFTWARE)
15: DC5 (SOFTWARE)
16: DC6 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
20: EC3 (SOFTWARE)
21: EC4 (SOFTWARE)
22: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:153 , TRP A:159 , ASP A:160 , GLN A:207 , GLY A:310 , ASP A:312 , GLN A:446 , TRP A:447 , TYR A:512 , PHE A:518 , TRP A:520 , GLC A:1548 , HOH A:2348
BINDING SITE FOR RESIDUE LG9 A1547
02
AC2
SOFTWARE
ARG A:152 , TYR A:157 , ASN A:196 , TYR A:202 , ARG A:205 , GLN A:207 , ARG A:277 , GLU A:279 , ALA A:307 , ASP A:312 , LG9 A:1547 , SO4 A:1552 , HOH A:2388
BINDING SITE FOR RESIDUE GLC A1548
03
AC5
SOFTWARE
PHE C:153 , TRP C:159 , ASP C:160 , GLN C:207 , GLY C:310 , ASP C:312 , GLN C:446 , TRP C:447 , TYR C:512 , PHE C:518 , TRP C:520 , GLC C:1548 , HOH C:2337
BINDING SITE FOR RESIDUE LG9 C1547
04
AC6
SOFTWARE
ARG C:152 , PHE C:153 , TYR C:157 , ASN C:196 , TYR C:202 , ARG C:205 , GLN C:207 , ARG C:277 , GLU C:279 , ALA C:307 , ASP C:312 , LG9 C:1547 , SO4 C:1551 , HOH C:2368
BINDING SITE FOR RESIDUE GLC C1548
05
AC9
SOFTWARE
ARG A:273 , HOH A:2004 , LYS C:255 , ARG C:256 , ASP C:272 , HOH C:2148 , HOH C:2369
BINDING SITE FOR RESIDUE SO4 C1549
06
BC1
SOFTWARE
GLU A:111 , GLY A:112
BINDING SITE FOR RESIDUE SO4 A1549
07
BC2
SOFTWARE
LYS A:255 , ARG A:256 , ASP A:272 , HOH A:2143 , HOH A:2389 , ILE C:42 , ARG C:273
BINDING SITE FOR RESIDUE SO4 A1550
08
BC3
SOFTWARE
LEU A:260 , GLN A:261 , TYR A:390 , HIS A:395 , HOH A:2390 , HOH A:2391
BINDING SITE FOR RESIDUE SO4 A1551
09
BC4
SOFTWARE
ARG A:277 , SER A:280 , ASP A:312 , PHE A:313 , TYR A:512 , GLC A:1548 , HOH A:2098 , HOH A:2392
BINDING SITE FOR RESIDUE SO4 A1552
10
BC5
SOFTWARE
ASP A:489 , ARG A:490 , HOH A:2394 , HOH A:2395 , HOH A:2396 , ARG C:398 , ASN C:399 , GLN C:400
BINDING SITE FOR RESIDUE SO4 A1553
11
CC3
SOFTWARE
HIS C:173 , ASP C:175 , LYS C:176
BINDING SITE FOR RESIDUE SO4 C1550
12
CC4
SOFTWARE
ARG C:277 , SER C:280 , ASP C:312 , PHE C:313 , GLC C:1548 , HOH C:2370 , HOH C:2371
BINDING SITE FOR RESIDUE SO4 C1551
13
CC5
SOFTWARE
GLN B:383 , LEU C:260 , GLN C:261 , TYR C:390 , HIS C:395 , HOH C:2372 , HOH C:2373 , HOH C:2374 , HOH C:2375
BINDING SITE FOR RESIDUE SO4 C1552
14
DC4
SOFTWARE
ASP A:224 , ARG D:128 , SER D:129
BINDING SITE FOR RESIDUE SO4 A1554
15
DC5
SOFTWARE
CYS A:539 , ASP A:540 , ASN A:541
BINDING SITE FOR RESIDUE SO4 A1555
16
DC6
SOFTWARE
HIS B:92 , ASN B:95 , HIS B:221 , HOH B:2442 , LYS C:106
BINDING SITE FOR RESIDUE SO4 B1555
17
DC8
SOFTWARE
LEU C:248 , GLN C:249 , ALA C:250 , LYS C:259 , HOH C:2376 , HOH C:2377
BINDING SITE FOR RESIDUE SO4 C1553
18
DC9
SOFTWARE
GLN A:85 , GLY C:356 , ASP C:357 , ASN C:358 , ALA C:359 , HOH C:2379
BINDING SITE FOR RESIDUE SO4 C1554
19
EC1
SOFTWARE
CYS C:539 , ASP C:540 , ASN C:541 , HOH C:2364
BINDING SITE FOR RESIDUE SO4 C1555
20
EC3
SOFTWARE
GLY A:506 , GLY A:507 , LEU A:514 , HOH A:2398
BINDING SITE FOR RESIDUE SO4 A1556
21
EC4
SOFTWARE
PRO A:534 , LYS A:535 , HOH A:2377 , HOH A:2379
BINDING SITE FOR RESIDUE SO4 A1557
22
EC5
SOFTWARE
HIS A:173 , ASP A:175
BINDING SITE FOR RESIDUE CA A1558
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TREHALASE_1 (A:149-162,C:149-162)
2: TREHALASE_2 (A:446-455,C:446-455)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TREHALASE_1
PS00927
Trehalase signature 1.
TREA_ECOLI
149-162
2
A:149-162
-
C:149-162
-
2
TREHALASE_2
PS00928
Trehalase signature 2.
TREA_ECOLI
446-455
2
A:446-455
-
C:446-455
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wyna_ (A:)
1b: SCOP_d2wynb_ (B:)
1c: SCOP_d2wync_ (C:)
1d: SCOP_d2wynd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Trehalase-like
(4)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d2wyna_
A:
1b
d2wynb_
B:
1c
d2wync_
C:
1d
d2wynd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Trehalase_2wynD01 (D:55-533)
1b: PFAM_Trehalase_2wynD02 (D:55-533)
1c: PFAM_Trehalase_2wynD03 (D:55-533)
1d: PFAM_Trehalase_2wynD04 (D:55-533)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Trehalase
(5)
Escherichia coli (strain K12)
(4)
1a
Trehalase-2wynD01
D:55-533
1b
Trehalase-2wynD02
D:55-533
1c
Trehalase-2wynD03
D:55-533
1d
Trehalase-2wynD04
D:55-533
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