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2WYN
Biol. Unit 1
Info
Asym.Unit (372 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (186 KB)
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(1)
Title
:
STRUCTURE OF FAMILY 37 TREHALASE FROM ESCHERICHIA COLI IN COMPLEX WITH A CASUARINE-6-O-A-D-GLUCOSIDE ANALOGUE
Authors
:
T. M. Gloster, S. M. Roberts, G. J. Davies, F. Cardona, A. Goti, C. Parmeg P. Parenti, P. Fusi, M. Forcella, L. Cipolla
Date
:
17 Nov 09 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Cardona, A. Goti, C. Parmeggiani, P. Parenti, M. Forcella, P. Fusi, L. Cipolla, S. M. Roberts, G. J. Davies, T. M. Gloster
Casuarine-6-O-Alpha-D-Glucoside And Its Analogues Are Tight Binding Inhibitors Of Insect And Bacterial Trehalases.
Chem. Commun. (Camb. ) V. 46 2629 2010
[
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
3a: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9a)
3b: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9b)
3c: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9c)
3d: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9d)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
3
LG9
2
Ligand/Ion
(1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDROXYMETHYL)HEXAHYDRO-1H-PYRROLIZINE-1,2,6-TRIOL
4
SO4
16
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC6 (SOFTWARE)
21: DC7 (SOFTWARE)
22: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
PHE B:153 , TRP B:159 , ASP B:160 , GLN B:207 , GLY B:310 , ASP B:312 , TRP B:447 , TYR B:512 , PHE B:518 , TRP B:520 , GLC B:1548 , HOH B:2432
BINDING SITE FOR RESIDUE LG9 B1547
02
AC4
SOFTWARE
ARG B:152 , TYR B:157 , ASN B:196 , TYR B:202 , ARG B:205 , GLN B:207 , ARG B:277 , GLU B:279 , ALA B:307 , ASP B:312 , LG9 B:1547 , SO4 B:1552 , HOH B:2288
BINDING SITE FOR RESIDUE GLC B1548
03
AC7
SOFTWARE
PHE D:153 , TRP D:159 , ASP D:160 , GLN D:207 , GLY D:310 , ASP D:312 , GLN D:446 , TRP D:447 , TYR D:512 , PHE D:518 , TRP D:520 , GLC D:1548 , HOH D:2332
BINDING SITE FOR RESIDUE LG9 D1547
04
AC8
SOFTWARE
ARG D:152 , TYR D:157 , ASN D:196 , TYR D:202 , ARG D:205 , GLN D:207 , ARG D:277 , GLU D:279 , ALA D:307 , ASP D:312 , LG9 D:1547 , SO4 D:1553 , HOH D:2333
BINDING SITE FOR RESIDUE GLC D1548
05
BC6
SOFTWARE
ILE B:42 , ARG B:273 , HOH B:2262 , LYS D:255 , ARG D:256 , ASP D:272 , HOH D:2137 , HOH D:2334
BINDING SITE FOR RESIDUE SO4 D1549
06
BC7
SOFTWARE
HIS B:173 , TRP B:174 , ASP B:175 , LYS B:176 , HOH B:2175 , HOH B:2433
BINDING SITE FOR RESIDUE SO4 B1549
07
BC8
SOFTWARE
ASP B:243 , LYS B:255 , ARG B:256 , ASP B:272 , HOH B:2434 , HOH B:2435 , ILE D:42 , ARG D:273 , HOH D:2005
BINDING SITE FOR RESIDUE SO4 B1550
08
BC9
SOFTWARE
LEU B:260 , GLN B:261 , TYR B:390 , HIS B:395 , HOH B:2436 , HOH B:2437 , HOH B:2438
BINDING SITE FOR RESIDUE SO4 B1551
09
CC1
SOFTWARE
ARG B:277 , SER B:280 , ASP B:312 , PHE B:313 , TYR B:512 , GLC B:1548 , HOH B:2439
BINDING SITE FOR RESIDUE SO4 B1552
10
CC2
SOFTWARE
ARG B:398 , ASN B:399 , GLN B:400 , HOH B:2338 , HOH B:2440
BINDING SITE FOR RESIDUE SO4 B1553
11
CC5
SOFTWARE
GLN B:383 , LEU C:260 , GLN C:261 , TYR C:390 , HIS C:395 , HOH C:2372 , HOH C:2373 , HOH C:2374 , HOH C:2375
BINDING SITE FOR RESIDUE SO4 C1552
12
CC6
SOFTWARE
GLU D:111 , GLY D:112 , HOH D:2335
BINDING SITE FOR RESIDUE SO4 D1550
13
CC7
SOFTWARE
SER D:129 , THR D:130 , GLU D:131 , ASN D:132 , HOH D:2086
BINDING SITE FOR RESIDUE SO4 D1551
14
CC8
SOFTWARE
HIS D:173 , TRP D:174 , ASP D:175 , LYS D:176 , HOH D:2337
BINDING SITE FOR RESIDUE SO4 D1552
15
CC9
SOFTWARE
ARG D:277 , SER D:280 , ASP D:312 , PHE D:313 , TYR D:512 , GLC D:1548 , HOH D:2338 , HOH D:2339
BINDING SITE FOR RESIDUE SO4 D1553
16
DC1
SOFTWARE
LEU D:260 , GLN D:261 , TYR D:390 , HIS D:395 , HOH D:2259 , HOH D:2340
BINDING SITE FOR RESIDUE SO4 D1554
17
DC2
SOFTWARE
ARG D:398 , ASN D:399 , GLN D:400 , HOH D:2341 , HOH D:2342
BINDING SITE FOR RESIDUE SO4 D1555
18
DC3
SOFTWARE
LYS B:102 , PRO B:534 , LYS B:535 , HOH B:2441
BINDING SITE FOR RESIDUE SO4 B1554
19
DC4
SOFTWARE
ASP A:224 , ARG D:128 , SER D:129
BINDING SITE FOR RESIDUE SO4 A1554
20
DC6
SOFTWARE
HIS B:92 , ASN B:95 , HIS B:221 , HOH B:2442 , LYS C:106
BINDING SITE FOR RESIDUE SO4 B1555
21
DC7
SOFTWARE
GLY B:356 , ASP B:357 , ASN B:358 , ALA B:359
BINDING SITE FOR RESIDUE SO4 B1556
22
EC2
SOFTWARE
GLY D:356 , ASN D:358 , ALA D:359 , HOH D:2343 , HOH D:2344
BINDING SITE FOR RESIDUE SO4 D1556
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TREHALASE_1 (B:149-162,D:149-162)
2: TREHALASE_2 (B:446-455,D:446-455)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TREHALASE_1
PS00927
Trehalase signature 1.
TREA_ECOLI
149-162
2
-
B:149-162
-
D:149-162
2
TREHALASE_2
PS00928
Trehalase signature 2.
TREA_ECOLI
446-455
2
-
B:446-455
-
D:446-455
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wyna_ (A:)
1b: SCOP_d2wynb_ (B:)
1c: SCOP_d2wync_ (C:)
1d: SCOP_d2wynd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Trehalase-like
(4)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d2wyna_
A:
1b
d2wynb_
B:
1c
d2wync_
C:
1d
d2wynd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Trehalase_2wynD01 (D:55-533)
1b: PFAM_Trehalase_2wynD02 (D:55-533)
1c: PFAM_Trehalase_2wynD03 (D:55-533)
1d: PFAM_Trehalase_2wynD04 (D:55-533)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Trehalase
(5)
Escherichia coli (strain K12)
(4)
1a
Trehalase-2wynD01
D:55-533
1b
Trehalase-2wynD02
D:55-533
1c
Trehalase-2wynD03
D:55-533
1d
Trehalase-2wynD04
D:55-533
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Asymmetric Unit 1
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