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2WYN
Asym. Unit
Info
Asym.Unit (372 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (186 KB)
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(1)
Title
:
STRUCTURE OF FAMILY 37 TREHALASE FROM ESCHERICHIA COLI IN COMPLEX WITH A CASUARINE-6-O-A-D-GLUCOSIDE ANALOGUE
Authors
:
T. M. Gloster, S. M. Roberts, G. J. Davies, F. Cardona, A. Goti, C. Parmeg P. Parenti, P. Fusi, M. Forcella, L. Cipolla
Date
:
17 Nov 09 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Cardona, A. Goti, C. Parmeggiani, P. Parenti, M. Forcella, P. Fusi, L. Cipolla, S. M. Roberts, G. J. Davies, T. M. Gloster
Casuarine-6-O-Alpha-D-Glucoside And Its Analogues Are Tight Binding Inhibitors Of Insect And Bacterial Trehalases.
Chem. Commun. (Camb. ) V. 46 2629 2010
[
close entry info
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Hetero Components
(4, 41)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: ALPHA-D-GLUCOSE (GLCa)
2b: ALPHA-D-GLUCOSE (GLCb)
2c: ALPHA-D-GLUCOSE (GLCc)
2d: ALPHA-D-GLUCOSE (GLCd)
3a: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9a)
3b: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9b)
3c: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9c)
3d: (1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDRO... (LG9d)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4ae: SULFATE ION (SO4ae)
4af: SULFATE ION (SO4af)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
3
LG9
4
Ligand/Ion
(1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDROXYMETHYL)HEXAHYDRO-1H-PYRROLIZINE-1,2,6-TRIOL
4
SO4
32
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:153 , TRP A:159 , ASP A:160 , GLN A:207 , GLY A:310 , ASP A:312 , GLN A:446 , TRP A:447 , TYR A:512 , PHE A:518 , TRP A:520 , GLC A:1548 , HOH A:2348
BINDING SITE FOR RESIDUE LG9 A1547
02
AC2
SOFTWARE
ARG A:152 , TYR A:157 , ASN A:196 , TYR A:202 , ARG A:205 , GLN A:207 , ARG A:277 , GLU A:279 , ALA A:307 , ASP A:312 , LG9 A:1547 , SO4 A:1552 , HOH A:2388
BINDING SITE FOR RESIDUE GLC A1548
03
AC3
SOFTWARE
PHE B:153 , TRP B:159 , ASP B:160 , GLN B:207 , GLY B:310 , ASP B:312 , TRP B:447 , TYR B:512 , PHE B:518 , TRP B:520 , GLC B:1548 , HOH B:2432
BINDING SITE FOR RESIDUE LG9 B1547
04
AC4
SOFTWARE
ARG B:152 , TYR B:157 , ASN B:196 , TYR B:202 , ARG B:205 , GLN B:207 , ARG B:277 , GLU B:279 , ALA B:307 , ASP B:312 , LG9 B:1547 , SO4 B:1552 , HOH B:2288
BINDING SITE FOR RESIDUE GLC B1548
05
AC5
SOFTWARE
PHE C:153 , TRP C:159 , ASP C:160 , GLN C:207 , GLY C:310 , ASP C:312 , GLN C:446 , TRP C:447 , TYR C:512 , PHE C:518 , TRP C:520 , GLC C:1548 , HOH C:2337
BINDING SITE FOR RESIDUE LG9 C1547
06
AC6
SOFTWARE
ARG C:152 , PHE C:153 , TYR C:157 , ASN C:196 , TYR C:202 , ARG C:205 , GLN C:207 , ARG C:277 , GLU C:279 , ALA C:307 , ASP C:312 , LG9 C:1547 , SO4 C:1551 , HOH C:2368
BINDING SITE FOR RESIDUE GLC C1548
07
AC7
SOFTWARE
PHE D:153 , TRP D:159 , ASP D:160 , GLN D:207 , GLY D:310 , ASP D:312 , GLN D:446 , TRP D:447 , TYR D:512 , PHE D:518 , TRP D:520 , GLC D:1548 , HOH D:2332
BINDING SITE FOR RESIDUE LG9 D1547
08
AC8
SOFTWARE
ARG D:152 , TYR D:157 , ASN D:196 , TYR D:202 , ARG D:205 , GLN D:207 , ARG D:277 , GLU D:279 , ALA D:307 , ASP D:312 , LG9 D:1547 , SO4 D:1553 , HOH D:2333
BINDING SITE FOR RESIDUE GLC D1548
09
AC9
SOFTWARE
ARG A:273 , HOH A:2004 , LYS C:255 , ARG C:256 , ASP C:272 , HOH C:2148 , HOH C:2369
BINDING SITE FOR RESIDUE SO4 C1549
10
BC1
SOFTWARE
GLU A:111 , GLY A:112
BINDING SITE FOR RESIDUE SO4 A1549
11
BC2
SOFTWARE
LYS A:255 , ARG A:256 , ASP A:272 , HOH A:2143 , HOH A:2389 , ILE C:42 , ARG C:273
BINDING SITE FOR RESIDUE SO4 A1550
12
BC3
SOFTWARE
LEU A:260 , GLN A:261 , TYR A:390 , HIS A:395 , HOH A:2390 , HOH A:2391
BINDING SITE FOR RESIDUE SO4 A1551
13
BC4
SOFTWARE
ARG A:277 , SER A:280 , ASP A:312 , PHE A:313 , TYR A:512 , GLC A:1548 , HOH A:2098 , HOH A:2392
BINDING SITE FOR RESIDUE SO4 A1552
14
BC5
SOFTWARE
ASP A:489 , ARG A:490 , HOH A:2394 , HOH A:2395 , HOH A:2396 , ARG C:398 , ASN C:399 , GLN C:400
BINDING SITE FOR RESIDUE SO4 A1553
15
BC6
SOFTWARE
ILE B:42 , ARG B:273 , HOH B:2262 , LYS D:255 , ARG D:256 , ASP D:272 , HOH D:2137 , HOH D:2334
BINDING SITE FOR RESIDUE SO4 D1549
16
BC7
SOFTWARE
HIS B:173 , TRP B:174 , ASP B:175 , LYS B:176 , HOH B:2175 , HOH B:2433
BINDING SITE FOR RESIDUE SO4 B1549
17
BC8
SOFTWARE
ASP B:243 , LYS B:255 , ARG B:256 , ASP B:272 , HOH B:2434 , HOH B:2435 , ILE D:42 , ARG D:273 , HOH D:2005
BINDING SITE FOR RESIDUE SO4 B1550
18
BC9
SOFTWARE
LEU B:260 , GLN B:261 , TYR B:390 , HIS B:395 , HOH B:2436 , HOH B:2437 , HOH B:2438
BINDING SITE FOR RESIDUE SO4 B1551
19
CC1
SOFTWARE
ARG B:277 , SER B:280 , ASP B:312 , PHE B:313 , TYR B:512 , GLC B:1548 , HOH B:2439
BINDING SITE FOR RESIDUE SO4 B1552
20
CC2
SOFTWARE
ARG B:398 , ASN B:399 , GLN B:400 , HOH B:2338 , HOH B:2440
BINDING SITE FOR RESIDUE SO4 B1553
21
CC3
SOFTWARE
HIS C:173 , ASP C:175 , LYS C:176
BINDING SITE FOR RESIDUE SO4 C1550
22
CC4
SOFTWARE
ARG C:277 , SER C:280 , ASP C:312 , PHE C:313 , GLC C:1548 , HOH C:2370 , HOH C:2371
BINDING SITE FOR RESIDUE SO4 C1551
23
CC5
SOFTWARE
GLN B:383 , LEU C:260 , GLN C:261 , TYR C:390 , HIS C:395 , HOH C:2372 , HOH C:2373 , HOH C:2374 , HOH C:2375
BINDING SITE FOR RESIDUE SO4 C1552
24
CC6
SOFTWARE
GLU D:111 , GLY D:112 , HOH D:2335
BINDING SITE FOR RESIDUE SO4 D1550
25
CC7
SOFTWARE
SER D:129 , THR D:130 , GLU D:131 , ASN D:132 , HOH D:2086
BINDING SITE FOR RESIDUE SO4 D1551
26
CC8
SOFTWARE
HIS D:173 , TRP D:174 , ASP D:175 , LYS D:176 , HOH D:2337
BINDING SITE FOR RESIDUE SO4 D1552
27
CC9
SOFTWARE
ARG D:277 , SER D:280 , ASP D:312 , PHE D:313 , TYR D:512 , GLC D:1548 , HOH D:2338 , HOH D:2339
BINDING SITE FOR RESIDUE SO4 D1553
28
DC1
SOFTWARE
LEU D:260 , GLN D:261 , TYR D:390 , HIS D:395 , HOH D:2259 , HOH D:2340
BINDING SITE FOR RESIDUE SO4 D1554
29
DC2
SOFTWARE
ARG D:398 , ASN D:399 , GLN D:400 , HOH D:2341 , HOH D:2342
BINDING SITE FOR RESIDUE SO4 D1555
30
DC3
SOFTWARE
LYS B:102 , PRO B:534 , LYS B:535 , HOH B:2441
BINDING SITE FOR RESIDUE SO4 B1554
31
DC4
SOFTWARE
ASP A:224 , ARG D:128 , SER D:129
BINDING SITE FOR RESIDUE SO4 A1554
32
DC5
SOFTWARE
CYS A:539 , ASP A:540 , ASN A:541
BINDING SITE FOR RESIDUE SO4 A1555
33
DC6
SOFTWARE
HIS B:92 , ASN B:95 , HIS B:221 , HOH B:2442 , LYS C:106
BINDING SITE FOR RESIDUE SO4 B1555
34
DC7
SOFTWARE
GLY B:356 , ASP B:357 , ASN B:358 , ALA B:359
BINDING SITE FOR RESIDUE SO4 B1556
35
DC8
SOFTWARE
LEU C:248 , GLN C:249 , ALA C:250 , LYS C:259 , HOH C:2376 , HOH C:2377
BINDING SITE FOR RESIDUE SO4 C1553
36
DC9
SOFTWARE
GLN A:85 , GLY C:356 , ASP C:357 , ASN C:358 , ALA C:359 , HOH C:2379
BINDING SITE FOR RESIDUE SO4 C1554
37
EC1
SOFTWARE
CYS C:539 , ASP C:540 , ASN C:541 , HOH C:2364
BINDING SITE FOR RESIDUE SO4 C1555
38
EC2
SOFTWARE
GLY D:356 , ASN D:358 , ALA D:359 , HOH D:2343 , HOH D:2344
BINDING SITE FOR RESIDUE SO4 D1556
39
EC3
SOFTWARE
GLY A:506 , GLY A:507 , LEU A:514 , HOH A:2398
BINDING SITE FOR RESIDUE SO4 A1556
40
EC4
SOFTWARE
PRO A:534 , LYS A:535 , HOH A:2377 , HOH A:2379
BINDING SITE FOR RESIDUE SO4 A1557
41
EC5
SOFTWARE
HIS A:173 , ASP A:175
BINDING SITE FOR RESIDUE CA A1558
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: TREHALASE_1 (A:149-162,B:149-162,C:149-162,D:14...)
2: TREHALASE_2 (A:446-455,B:446-455,C:446-455,D:44...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TREHALASE_1
PS00927
Trehalase signature 1.
TREA_ECOLI
149-162
4
A:149-162
B:149-162
C:149-162
D:149-162
2
TREHALASE_2
PS00928
Trehalase signature 2.
TREA_ECOLI
446-455
4
A:446-455
B:446-455
C:446-455
D:446-455
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wyna_ (A:)
1b: SCOP_d2wynb_ (B:)
1c: SCOP_d2wync_ (C:)
1d: SCOP_d2wynd_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Trehalase-like
(4)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d2wyna_
A:
1b
d2wynb_
B:
1c
d2wync_
C:
1d
d2wynd_
D:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Trehalase_2wynD01 (D:55-533)
1b: PFAM_Trehalase_2wynD02 (D:55-533)
1c: PFAM_Trehalase_2wynD03 (D:55-533)
1d: PFAM_Trehalase_2wynD04 (D:55-533)
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Clan
:
6_Hairpin
(120)
Family
:
Trehalase
(5)
Escherichia coli (strain K12)
(4)
1a
Trehalase-2wynD01
D:55-533
1b
Trehalase-2wynD02
D:55-533
1c
Trehalase-2wynD03
D:55-533
1d
Trehalase-2wynD04
D:55-533
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