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2WYI
Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (295 KB)
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(1)
Title
:
STRUCTURE OF THE STREPTOCOCCUS PYOGENES FAMILY GH38 ALPHA-MANNOSIDASE COMPLEXED WITH SWAINSONINE
Authors
:
M. D. L. Suits, Y. Zhu, E. J. Taylor, D. L. Zechel, H. J. Gilbert, G. J. Dav
Date
:
16 Nov 09 (Deposition) - 16 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. D. L. Suits, Y. Zhu, E. J. Taylor, D. L. Zechel, H. J. Gilbert, G. J. Davies
Structure And Kinetic Investigation Of Streptococcus Pyogenes Family Gh38 Alpha-Mannosidase
Plos One V. 5 E9006 2010
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
1b: 2-(2-METHOXYETHOXY)ETHANOL (PG0b)
1c: 2-(2-METHOXYETHOXY)ETHANOL (PG0c)
1d: 2-(2-METHOXYETHOXY)ETHANOL (PG0d)
1e: 2-(2-METHOXYETHOXY)ETHANOL (PG0e)
1f: 2-(2-METHOXYETHOXY)ETHANOL (PG0f)
1g: 2-(2-METHOXYETHOXY)ETHANOL (PG0g)
1h: 2-(2-METHOXYETHOXY)ETHANOL (PG0h)
1i: 2-(2-METHOXYETHOXY)ETHANOL (PG0i)
1j: 2-(2-METHOXYETHOXY)ETHANOL (PG0j)
1k: 2-(2-METHOXYETHOXY)ETHANOL (PG0k)
2a: 1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2... (SWAa)
2b: 1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2... (SWAb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PG0
11
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
2
SWA
2
Ligand/Ion
1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2A,8B-TRIOL
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:303 , GLU A:771 , LEU A:775 , LYS A:777 , PG0 A:1903
BINDING SITE FOR RESIDUE PG0 A1902
02
AC2
SOFTWARE
GLU A:771 , PG0 A:1902 , HOH A:2218 , PG0 B:1902
BINDING SITE FOR RESIDUE PG0 A1903
03
AC3
SOFTWARE
GLY A:802
BINDING SITE FOR RESIDUE PG0 A1904
04
AC4
SOFTWARE
ARG A:310 , TYR A:374 , HOH A:2221 , HOH A:2222
BINDING SITE FOR RESIDUE PG0 A1905
05
AC5
SOFTWARE
HIS A:13 , ASP A:15 , ASP A:125 , HIS A:351 , SWA A:1907
BINDING SITE FOR RESIDUE ZN A1906
06
AC6
SOFTWARE
HIS A:13 , ASP A:15 , TRP A:18 , ASP A:125 , PHE A:127 , ARG A:149 , TYR A:192 , ASP A:232 , HIS A:351 , ASP A:352 , TYR A:574 , ASP A:763 , ZN A:1906
BINDING SITE FOR RESIDUE SWA A1907
07
AC7
SOFTWARE
PG0 A:1903 , LEU B:775 , HOH B:2114 , HOH B:2116
BINDING SITE FOR RESIDUE PG0 B1902
08
AC8
SOFTWARE
ARG B:310 , TYR B:374 , PG0 B:1905
BINDING SITE FOR RESIDUE PG0 B1903
09
AC9
SOFTWARE
GLY B:802 , PG0 B:1905
BINDING SITE FOR RESIDUE PG0 B1904
10
BC1
SOFTWARE
ARG B:310 , SER B:781 , PG0 B:1903 , PG0 B:1904 , HOH B:2123
BINDING SITE FOR RESIDUE PG0 B1905
11
BC2
SOFTWARE
ALA B:624
BINDING SITE FOR RESIDUE PG0 B1906
12
BC3
SOFTWARE
ARG B:149
BINDING SITE FOR RESIDUE PG0 B1907
13
BC4
SOFTWARE
HIS B:13 , ASP B:15 , ASP B:125 , HIS B:351 , SWA B:1909
BINDING SITE FOR RESIDUE ZN B1908
14
BC5
SOFTWARE
HIS B:13 , ASP B:15 , TRP B:18 , ASP B:125 , PHE B:127 , ARG B:149 , TYR B:192 , ASP B:232 , HIS B:351 , ASP B:352 , TYR B:574 , ASP B:763 , ZN B:1908
BINDING SITE FOR RESIDUE SWA B1909
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_38_2wyiB01 (B:5-286)
1b: PFAM_Glyco_hydro_38_2wyiB02 (B:5-286)
2a: PFAM_Glyco_hydro_38C_2wyiB03 (B:402-897)
2b: PFAM_Glyco_hydro_38C_2wyiB04 (B:402-897)
3a: PFAM_Alpha_mann_mid_2wyiB05 (B:293-370)
3b: PFAM_Alpha_mann_mid_2wyiB06 (B:293-370)
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Clans
(
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(
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Families
(
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(
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Organisms
(
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(
)
Clan
:
GH_CE
(28)
Family
:
Glyco_hydro_38
(17)
Streptococcus pyogenes serotype M1
(2)
1a
Glyco_hydro_38-2wyiB01
B:5-286
1b
Glyco_hydro_38-2wyiB02
B:5-286
Clan
:
Gal_mutarotase
(81)
Family
:
Glyco_hydro_38C
(17)
Streptococcus pyogenes serotype M1
(2)
2a
Glyco_hydro_38C-2wyiB03
B:402-897
2b
Glyco_hydro_38C-2wyiB04
B:402-897
Clan
:
no clan defined [family: Alpha-mann_mid]
(17)
Family
:
Alpha-mann_mid
(17)
Streptococcus pyogenes serotype M1
(2)
3a
Alpha-mann_mid-2wyiB05
B:293-370
3b
Alpha-mann_mid-2wyiB06
B:293-370
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