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2WYH
Asym. Unit
Info
Asym.Unit (314 KB)
Biol.Unit 1 (307 KB)
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(1)
Title
:
STRUCTURE OF THE STREPTOCOCCUS PYOGENES FAMILY GH38 ALPHA-MANNOSIDASE
Authors
:
M. D. L. Suits, Y. Zhu, E. J. Taylor, D. L. Zechel, H. J. Gilbert, G. J. Dav
Date
:
16 Nov 09 (Deposition) - 16 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoside Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. L. Suits, Y. Zhu, E. J. Taylor, D. L. Zechel, H. J. Gilbert, G. J. Davies
Structure And Kinetic Investigation Of Streptococcus Pyogenes Family Gh38 Alpha-Mannosidase
Plos One V. 5 E9006 2010
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
2
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:13 , ASP A:15 , ASP A:125 , HIS A:351 , HOH A:2010
BINDING SITE FOR RESIDUE ZN A 902
02
AC2
SOFTWARE
GLN A:24 , ARG A:28 , HOH A:2467 , HOH A:2468 , HIS B:378 , TYR B:379 , LYS B:382
BINDING SITE FOR RESIDUE GOL A 903
03
AC3
SOFTWARE
ARG A:102 , LEU A:105 , LEU A:338 , ARG A:339 , TRP A:342 , HOH A:2208 , HOH A:2469
BINDING SITE FOR RESIDUE GOL A 904
04
AC4
SOFTWARE
THR A:201 , GLU A:202 , HOH A:2114 , HOH A:2470
BINDING SITE FOR RESIDUE GOL A 905
05
AC5
SOFTWARE
PRO A:479 , LYS A:480 , ARG A:481 , HOH A:2277
BINDING SITE FOR RESIDUE GOL A 906
06
AC6
SOFTWARE
ARG A:546 , ARG A:563
BINDING SITE FOR RESIDUE GOL A 907
07
AC7
SOFTWARE
THR A:686 , ASP A:687 , HIS A:688 , HOH A:2349
BINDING SITE FOR RESIDUE GOL A 908
08
AC8
SOFTWARE
ARG A:310 , GLU A:371
BINDING SITE FOR RESIDUE GOL A 909
09
AC9
SOFTWARE
HIS B:13 , ASP B:15 , ASP B:125 , HIS B:351
BINDING SITE FOR RESIDUE ZN B 902
10
BC1
SOFTWARE
HIS A:378 , TYR A:379 , LYS A:382 , HOH A:2225 , GLN B:24 , ARG B:28
BINDING SITE FOR RESIDUE TRS B 903
11
BC2
SOFTWARE
THR B:686 , ASP B:687 , HIS B:688
BINDING SITE FOR RESIDUE GOL B 904
12
BC3
SOFTWARE
ASP B:619 , LYS B:620 , SER B:640 , GLN B:641
BINDING SITE FOR RESIDUE GOL B 905
13
BC4
SOFTWARE
PRO B:479 , LYS B:480 , ARG B:481 , HOH B:2260
BINDING SITE FOR RESIDUE GOL B 906
14
BC5
SOFTWARE
ARG B:660 , TYR B:782 , GLY B:802 , HOH B:2397 , HOH B:2445
BINDING SITE FOR RESIDUE GOL B 907
15
BC6
SOFTWARE
ARG B:102 , ILE B:106 , LEU B:338 , ARG B:339 , TRP B:342 , HOH B:2186
BINDING SITE FOR RESIDUE GOL B 908
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_38_2wyhB01 (B:5-286)
1b: PFAM_Glyco_hydro_38_2wyhB02 (B:5-286)
2a: PFAM_Glyco_hydro_38C_2wyhB03 (B:402-897)
2b: PFAM_Glyco_hydro_38C_2wyhB04 (B:402-897)
3a: PFAM_Alpha_mann_mid_2wyhB05 (B:293-370)
3b: PFAM_Alpha_mann_mid_2wyhB06 (B:293-370)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GH_CE
(28)
Family
:
Glyco_hydro_38
(17)
Streptococcus pyogenes serotype M1
(2)
1a
Glyco_hydro_38-2wyhB01
B:5-286
1b
Glyco_hydro_38-2wyhB02
B:5-286
Clan
:
Gal_mutarotase
(81)
Family
:
Glyco_hydro_38C
(17)
Streptococcus pyogenes serotype M1
(2)
2a
Glyco_hydro_38C-2wyhB03
B:402-897
2b
Glyco_hydro_38C-2wyhB04
B:402-897
Clan
:
no clan defined [family: Alpha-mann_mid]
(17)
Family
:
Alpha-mann_mid
(17)
Streptococcus pyogenes serotype M1
(2)
3a
Alpha-mann_mid-2wyhB05
B:293-370
3b
Alpha-mann_mid-2wyhB06
B:293-370
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Asymmetric Unit 1
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