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2WYF
Biol. Unit 1
Info
Asym.Unit (169 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (44 KB)
Biol.Unit 5 (83 KB)
Biol.Unit 6 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH AGAL12BGAL-O-MET AT 2.4 A RESOLUTION
Authors
:
A. Nurisso, B. Blanchard, A. Varrot, A. Imberty
Date
:
16 Nov 09 (Deposition) - 21 Apr 10 (Release) - 03 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: E,F,G,H (1x)
Biol. Unit 6: A,B,C,D (1x)
Keywords
:
Sugar Binding Protein, Lectin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nurisso, B. Blanchard, A. Audfray, L. Rydner, S. Oscarson, A. Varrot, A. Imberty
Role Of Water Molecules In Structure And Energetics Of Pseudomonas Aeruginosa Lectin I Interacting With Disaccharides.
J. Biol. Chem. V. 285 20316 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA D-GALACTOSE (GLAa)
2b: ALPHA D-GALACTOSE (GLAb)
2c: ALPHA D-GALACTOSE (GLAc)
2d: ALPHA D-GALACTOSE (GLAd)
2e: ALPHA D-GALACTOSE (GLAe)
2f: ALPHA D-GALACTOSE (GLAf)
2g: ALPHA D-GALACTOSE (GLAg)
2h: ALPHA D-GALACTOSE (GLAh)
3a: METHYL-BETA-GALACTOSE (MBGa)
3b: METHYL-BETA-GALACTOSE (MBGb)
3c: METHYL-BETA-GALACTOSE (MBGc)
3d: METHYL-BETA-GALACTOSE (MBGd)
3e: METHYL-BETA-GALACTOSE (MBGe)
3f: METHYL-BETA-GALACTOSE (MBGf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GLA
2
Ligand/Ion
ALPHA D-GALACTOSE
3
MBG
1
Ligand/Ion
METHYL-BETA-GALACTOSE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:36 , ASP A:100 , THR A:104 , ASN A:107 , ASN A:108 , GLA A:201
BINDING SITE FOR RESIDUE CA A 200
2
AC2
SOFTWARE
TYR A:36 , HIS A:50 , GLN A:53 , ASP A:100 , THR A:104 , ASN A:107 , CA A:200 , MBG A:202 , HOH A:2086 , HOH A:2087
BINDING SITE FOR RESIDUE GLA A 201
3
AC3
SOFTWARE
HIS A:50 , GLN A:53 , GLA A:201 , HOH A:2089 , HOH A:2090 , HOH A:2091 , THR D:39
BINDING SITE FOR RESIDUE MBG A 202
4
AC4
SOFTWARE
TYR B:36 , ASP B:100 , THR B:104 , ASN B:107 , ASN B:108 , GLA B:201
BINDING SITE FOR RESIDUE CA B 200
5
AC5
SOFTWARE
TYR B:36 , HIS B:50 , GLN B:53 , ASP B:100 , THR B:104 , ASN B:107 , CA B:200 , HOH B:2073 , HOH B:2074 , HOH B:2075
BINDING SITE FOR RESIDUE GLA B 201
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2wyfa_ (A:)
1b: SCOP_d2wyfb_ (B:)
1c: SCOP_d2wyfc_ (C:)
1d: SCOP_d2wyfd_ (D:)
1e: SCOP_d2wyfe_ (E:)
1f: SCOP_d2wyff_ (F:)
1g: SCOP_d2wyfg_ (G:)
1h: SCOP_d2wyfh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PA-IL, galactose-binding lectin 1
(12)
Protein domain
:
PA-IL, galactose-binding lectin 1
(12)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d2wyfa_
A:
1b
d2wyfb_
B:
1c
d2wyfc_
C:
1d
d2wyfd_
D:
1e
d2wyfe_
E:
1f
d2wyff_
F:
1g
d2wyfg_
G:
1h
d2wyfh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2wyfA00 (A:1-121)
1b: CATH_2wyfC00 (C:1-121)
1c: CATH_2wyfD00 (D:1-121)
1d: CATH_2wyfE00 (E:1-121)
1e: CATH_2wyfF00 (F:1-121)
1f: CATH_2wyfG00 (G:1-121)
1g: CATH_2wyfH00 (H:1-121)
1h: CATH_2wyfB00 (B:1-121)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding lectin
(5)
Pseudomonas aeruginosa. Organism_taxid: 208964. Strain: pao1.
(2)
1a
2wyfA00
A:1-121
1b
2wyfC00
C:1-121
1c
2wyfD00
D:1-121
1d
2wyfE00
E:1-121
1e
2wyfF00
F:1-121
1f
2wyfG00
G:1-121
1g
2wyfH00
H:1-121
1h
2wyfB00
B:1-121
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_PA_IL_2wyfH01 (H:1-121)
1b: PFAM_PA_IL_2wyfH02 (H:1-121)
1c: PFAM_PA_IL_2wyfH03 (H:1-121)
1d: PFAM_PA_IL_2wyfH04 (H:1-121)
1e: PFAM_PA_IL_2wyfH05 (H:1-121)
1f: PFAM_PA_IL_2wyfH06 (H:1-121)
1g: PFAM_PA_IL_2wyfH07 (H:1-121)
1h: PFAM_PA_IL_2wyfH08 (H:1-121)
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Clans
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)
Organisms
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)
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)
Clan
:
GBD
(153)
Family
:
PA-IL
(5)
Pseudomonas aeruginosa
(5)
1a
PA-IL-2wyfH01
H:1-121
1b
PA-IL-2wyfH02
H:1-121
1c
PA-IL-2wyfH03
H:1-121
1d
PA-IL-2wyfH04
H:1-121
1e
PA-IL-2wyfH05
H:1-121
1f
PA-IL-2wyfH06
H:1-121
1g
PA-IL-2wyfH07
H:1-121
1h
PA-IL-2wyfH08
H:1-121
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (44 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
Biol.Unit 4 (44 KB)
Header - Biol.Unit 4
Biol.Unit 5 (83 KB)
Header - Biol.Unit 5
Biol.Unit 6 (83 KB)
Header - Biol.Unit 6
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