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2WWY
Asym. Unit
Info
Asym.Unit (423 KB)
Biol.Unit 1 (414 KB)
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(1)
Title
:
STRUCTURE OF HUMAN RECQ-LIKE HELICASE IN COMPLEX WITH A DNA SUBSTRATE
Authors
:
A. C. W. Pike, Y. Zhang, C. Schnecke, A. Chaikuad, T. Krojer, C. D. O. Cooper, F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. Edwards, C. Bountra, O. Gileadi
Date
:
30 Oct 09 (Deposition) - 29 Dec 09 (Release) - 16 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,O,P,Q,R,S,T
Biol. Unit 1: A,B,O,P,Q,R,S,T (1x)
Keywords
:
Hydrolase-Dna Complex, Nuclear Protein, Hydrolase, Dna Strand Annealing, Dna-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. W. Pike, Y. Zhang, C. Schnecke, A. Chaikuad, T. Krojer, C. D. O. Cooper, F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. Edwards, C. Bountra, O. Gileadi
Recq1 Helicase-Driven Dna Unwinding, Annealing, And Branch Migration: Insights From Dna Complex Structures
Proc. Natl. Acad. Sci. Usa V. 112 4286 2015
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
4
Ligand/Ion
SULFATE ION
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:453 , CYS A:471 , CYS A:475 , CYS A:478
BINDING SITE FOR RESIDUE ZN A1595
2
AC2
SOFTWARE
GLY A:116 , GLY A:117 , GLY A:118 , LYS A:119 , SER A:120
BINDING SITE FOR RESIDUE SO4 A2000
3
AC3
SOFTWARE
GLN A:292 , TYR A:418 , PHE A:420 , GLU A:543
BINDING SITE FOR RESIDUE EDO A2001
4
AC4
SOFTWARE
CYS B:453 , CYS B:471 , CYS B:475 , CYS B:478
BINDING SITE FOR RESIDUE ZN B1595
5
AC5
SOFTWARE
THR B:115 , GLY B:116 , GLY B:117 , GLY B:118 , LYS B:119 , SER B:120
BINDING SITE FOR RESIDUE SO4 B2000
6
AC6
SOFTWARE
GLN B:292 , TYR B:418 , GLU B:540 , GLU B:543
BINDING SITE FOR RESIDUE EDO B2001
7
AC7
SOFTWARE
ARG A:311 , ARG B:311
BINDING SITE FOR RESIDUE SO4 B1597
8
AC8
SOFTWARE
ARG A:486
BINDING SITE FOR RESIDUE SO4 A1596
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_034679 (V102I, chain A/B, )
2: VAR_051732 (V372I, chain A/B, )
3: VAR_016140 (K487T, chain A/B, )
4: VAR_016141 (D495H, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034679
V
102
I
RECQ1_HUMAN
Polymorphism
1065751
A/B
V
102
I
2
UniProt
VAR_051732
V
372
I
RECQ1_HUMAN
Polymorphism
2230003
A/B
V
372
I
3
UniProt
VAR_016140
K
487
T
RECQ1_HUMAN
Polymorphism
6501
A/B
K
487
T
4
UniProt
VAR_016141
D
495
H
RECQ1_HUMAN
Polymorphism
6499
A/B
D
495
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_RQC_2wwyB01 (B:488-592)
1b: PFAM_RQC_2wwyB02 (B:488-592)
2a: PFAM_DEAD_2wwyB03 (B:93-264)
2b: PFAM_DEAD_2wwyB04 (B:93-264)
3a: PFAM_Helicase_C_2wwyB05 (B:332-409)
3b: PFAM_Helicase_C_2wwyB06 (B:332-409)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
RQC
(4)
Homo sapiens (Human)
(2)
1a
RQC-2wwyB01
B:488-592
1b
RQC-2wwyB02
B:488-592
Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Homo sapiens (Human)
(12)
2a
DEAD-2wwyB03
B:93-264
2b
DEAD-2wwyB04
B:93-264
Family
:
Helicase_C
(51)
Homo sapiens (Human)
(15)
3a
Helicase_C-2wwyB05
B:332-409
3b
Helicase_C-2wwyB06
B:332-409
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Asymmetric Unit 1
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Asym.Unit (423 KB)
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