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2WWJ
Biol. Unit 1
Info
Asym.Unit (129 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR 10A
Authors
:
N. R. Rose, I. J. Clifton, U. Oppermann, M. A. Mcdonough, C. J. Schofield
Date
:
23 Oct 09 (Deposition) - 09 Mar 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Chromatin Regulator, Double-Stranded Beta Helix, Oxidoreductase, Transcription, Oxygenase, Host-Virus Interaction, Transcription Regulation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
N. R. Rose, E. C. Y. Woon, G. L. Kingham, O. N. F. King, J. Mecinovic, I. J. Clifton, S. S. Ng, J. Talib-Hardy, U. Oppermann, M. A. Mcdonough, C. J. Schofield
Selective Inhibitors Of The Jmjd2 Histone Demethylases: Combined Nondenaturing Mass Spectrometric Screening And Crystallographic Approaches.
J. Med. Chem. V. 53 1810 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
1b: NICKEL (II) ION (NIb)
2a: O-BENZYL-N-(CARBOXYCARBONYL)-D-TYR... (Y28a)
2b: O-BENZYL-N-(CARBOXYCARBONYL)-D-TYR... (Y28b)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
NI
-1
Ligand/Ion
NICKEL (II) ION
2
Y28
1
Ligand/Ion
O-BENZYL-N-(CARBOXYCARBONYL)-D-TYROSINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:71 , GLN A:84 , ASN A:86 , TYR A:132 , TYR A:177 , PHE A:185 , ALA A:186 , HIS A:188 , GLU A:190 , SER A:196 , ASN A:198 , LYS A:206 , TRP A:208 , LYS A:241 , HIS A:276 , SER A:288 , NI A:501 , HOH A:2035
BINDING SITE FOR RESIDUE Y28 A1354
2
AC2
SOFTWARE
HIS A:188 , GLU A:190 , HIS A:276 , Y28 A:1354 , HOH A:2035
BINDING SITE FOR RESIDUE NI A 501
3
AC3
SOFTWARE
CYS A:234 , HIS A:240 , CYS A:306 , CYS A:308
BINDING SITE FOR RESIDUE ZN A 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: JMJN (A:14-56)
2: JMJC (A:142-308)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJN
PS51183
JmjN domain profile.
KDM4A_HUMAN
14-56
1
A:14-56
-
2
JMJC
PS51184
JmjC domain profile.
KDM4A_HUMAN
142-308
1
A:142-308
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2wwja_ (A:)
1b: SCOP_d2wwjb_ (B:)
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
Histone demethylase core
(19)
Protein domain
:
JMJD2A core
(13)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d2wwja_
A:
1b
d2wwjb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_JmjC_2wwjB01 (B:175-291)
1b: PFAM_JmjC_2wwjB02 (B:175-291)
2a: PFAM_JmjN_2wwjB03 (B:15-49)
2b: PFAM_JmjN_2wwjB04 (B:15-49)
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Organisms
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)
Clan
:
Cupin
(179)
Family
:
JmjC
(39)
Homo sapiens (Human)
(31)
1a
JmjC-2wwjB01
B:175-291
1b
JmjC-2wwjB02
B:175-291
Clan
:
no clan defined [family: JmjN]
(16)
Family
:
JmjN
(16)
Homo sapiens (Human)
(16)
2a
JmjN-2wwjB03
B:15-49
2b
JmjN-2wwjB04
B:15-49
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Show PDB file:
Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
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