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2WVV
Asym. Unit
Info
Asym.Unit (316 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON
Authors
:
A. Lammerts Van Bueren, A. Ardevol, J. Fayers-Kerr, B. Luo, Y. Zhang, M. Sollogoub, Y. Bleriot, C. Rovira, G. J. Davies
Date
:
20 Oct 09 (Deposition) - 02 Feb 10 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B (1x)
Biol. Unit 2: C (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: D (1x)
Keywords
:
Alpha-L-Fucose, Hydrolase, Glycoside Hydrolase Family 29
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Lammerts Van Bueren, A. Ardevol, J. Fayers-Kerr, B. Luo, Y. Zhang, M. Sollogoub, Y. Bleriot, C. Rovira, G. J. Davies
Analysis Of The Reaction Coordinate Of Alpha-L-Fucosidases: A Combined Structural And Quantum Mechanical Approach
J. Am. Chem. Soc. V. 132 1804 2010
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
3c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
3d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
4
Ligand/Ion
SULFATE ION
3
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:66 , GLU B:87 , TRP B:88 , HIS B:135 , HIS B:136 , TYR B:178 , ASP B:229 , TRP B:232 , TRP B:316 , HOH B:2342 , HOH B:2343 , HOH B:2344 , HOH B:2345
BINDING SITE FOR RESIDUE TRS B1709
02
AC2
SOFTWARE
HIS C:66 , GLU C:87 , TRP C:88 , HIS C:135 , HIS C:136 , TYR C:178 , ASP C:229 , TRP C:232 , TRP C:316 , HOH C:2161 , HOH C:2280 , HOH C:2282
BINDING SITE FOR RESIDUE TRS C1709
03
AC3
SOFTWARE
HIS A:66 , GLU A:87 , TRP A:88 , HIS A:135 , HIS A:136 , ASP A:229 , GLU A:288 , TRP A:316 , HOH A:2276
BINDING SITE FOR RESIDUE TRS A1473
04
AC4
SOFTWARE
HIS D:66 , GLU D:87 , TRP D:88 , HIS D:135 , TYR D:178 , ASP D:229 , GLU D:288 , TRP D:316 , HOH D:2184
BINDING SITE FOR RESIDUE TRS D1472
05
AC5
SOFTWARE
TRP B:88 , ASP B:481 , LEU B:483 , HOH B:2052 , HOH B:2344 , HOH B:2345
BINDING SITE FOR RESIDUE GOL B1710
06
AC6
SOFTWARE
GLY B:437 , PRO C:73 , GLU C:76 , TRP C:77 , ASN C:78 , HOH C:2032
BINDING SITE FOR RESIDUE GOL C1710
07
AC7
SOFTWARE
GLY B:277 , TRP B:303
BINDING SITE FOR RESIDUE GOL B1711
08
AC8
SOFTWARE
ALA B:471 , ALA B:472 , LYS B:473
BINDING SITE FOR RESIDUE GOL A1476
09
AC9
SOFTWARE
LYS B:90 , ALA B:97
BINDING SITE FOR RESIDUE SO4 B1712
10
BC1
SOFTWARE
ARG D:262 , ARG D:271 , HIS D:272
BINDING SITE FOR RESIDUE SO4 D1473
11
BC2
SOFTWARE
TRP A:232 , ARG A:262 , ARG A:271 , HIS A:272
BINDING SITE FOR RESIDUE SO4 A1474
12
BC3
SOFTWARE
LYS A:80 , TYR A:82 , GLY A:83 , HOH A:2277 , HOH A:2278
BINDING SITE FOR RESIDUE SO4 A1475
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Alpha_L_fucos_2wvvD01 (D:35-383)
1b: PFAM_Alpha_L_fucos_2wvvD02 (D:35-383)
1c: PFAM_Alpha_L_fucos_2wvvD03 (D:35-383)
1d: PFAM_Alpha_L_fucos_2wvvD04 (D:35-383)
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Clans
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)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha_L_fucos
(18)
Bacteroides thetaiotaomicron
(6)
1a
Alpha_L_fucos-2wvvD01
D:35-383
1b
Alpha_L_fucos-2wvvD02
D:35-383
1c
Alpha_L_fucos-2wvvD03
D:35-383
1d
Alpha_L_fucos-2wvvD04
D:35-383
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Asymmetric Unit 1
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Asym.Unit (316 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
Biol.Unit 4 (79 KB)
Header - Biol.Unit 4
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