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2WVT
Asym. Unit
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Asym.Unit (160 KB)
Biol.Unit 1 (155 KB)
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Title
:
CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH A NOVEL IMINOSUGAR FUCOSIDASE INHIBITOR
Authors
:
A. Lammerts Van Bueren, A. Ardevol, J. Fayers-Kerr, B. Luo, Y. Zhang, M. Sollogoub, Y. Bleriot, C. Rovira, G. J. Davies
Date
:
20 Oct 09 (Deposition) - 02 Feb 10 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Alpha-L-Fucose, Glycoside Hydrolase Family 29
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Lammerts Van Bueren, A. Ardevol, J. Fayers-Kerr, B. Luo, Y. Zhang, M. Sollogoub, Y. Bleriot, C. Rovira, G. J. Davies
Analysis Of The Reaction Coordinate Of Alpha-L- Fucosidases: A Combined Structural And Quantum Mechanical Approach.
J. Am. Chem. Soc. V. 132 1804 2010
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: (2S,3R,5R,6S)-3,4,5-TRIHYDROXY-2,6... (FHNa)
1b: (2S,3R,5R,6S)-3,4,5-TRIHYDROXY-2,6... (FHNb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: IMIDAZOLE (IMDa)
3b: IMIDAZOLE (IMDb)
3c: IMIDAZOLE (IMDc)
3d: IMIDAZOLE (IMDd)
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Label:
No.
Name
Count
Type
Full Name
1
FHN
2
Ligand/Ion
(2S,3R,5R,6S)-3,4,5-TRIHYDROXY-2,6-BIS(HYDROXYMETHYL)PIPERIDINIUM
2
GOL
5
Ligand/Ion
GLYCEROL
3
IMD
4
Ligand/Ion
IMIDAZOLE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:66 , GLU A:87 , TRP A:88 , HIS A:135 , HIS A:136 , TYR A:178 , TRP A:227 , ASP A:229 , ARG A:262 , GLU A:288 , CYS A:308 , TRP A:316
BINDING SITE FOR RESIDUE FHN A1473
2
AC2
SOFTWARE
HIS B:66 , GLU B:87 , TRP B:88 , HIS B:135 , HIS B:136 , TYR B:178 , TRP B:227 , ASP B:229 , ARG B:262 , GLU B:288 , CYS B:308 , TRP B:316
BINDING SITE FOR RESIDUE FHN B1474
3
AC3
SOFTWARE
TRP A:232 , ARG A:262 , ARG A:271 , HIS A:272 , GLY A:286 , HOH A:2214
BINDING SITE FOR RESIDUE GOL A1474
4
AC4
SOFTWARE
GLU A:284 , GLY A:286 , TYR A:287
BINDING SITE FOR RESIDUE GOL A1475
5
AC5
SOFTWARE
ALA B:85 , GLU B:87 , TRP B:88 , ASN B:314 , TRP B:316 , HOH B:2131
BINDING SITE FOR RESIDUE GOL B1475
6
AC6
SOFTWARE
ASP A:393 , VAL B:295 , LYS B:391 , GLN B:392 , ASP B:393 , HOH B:2241
BINDING SITE FOR RESIDUE GOL B1476
7
AC7
SOFTWARE
ASP A:393 , ASP B:335 , LYS B:391 , GLY B:395 , TYR B:396 , ASN B:411 , HOH B:2211
BINDING SITE FOR RESIDUE GOL B1477
8
AC8
SOFTWARE
LYS A:456 , LYS A:457 , ASN A:458 , HOH A:2208
BINDING SITE FOR RESIDUE IMD A1477
9
AC9
SOFTWARE
LYS B:90 , SER B:91 , TYR B:191
BINDING SITE FOR RESIDUE IMD B1479
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Alpha_L_fucos_2wvtB01 (B:35-383)
1b: PFAM_Alpha_L_fucos_2wvtB02 (B:35-383)
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Clans
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Organisms
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(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha_L_fucos
(18)
Bacteroides thetaiotaomicron
(6)
1a
Alpha_L_fucos-2wvtB01
B:35-383
1b
Alpha_L_fucos-2wvtB02
B:35-383
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Asymmetric Unit 1
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