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2WVH
Asym. Unit
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Asym.Unit (1.4 MB)
Biol.Unit 1 (696 KB)
Biol.Unit 2 (724 KB)
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(1)
Title
:
STRUCTURAL INSIGHTS INTO THE PRE-REACTION STATE OF PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS
Authors
:
X. Y. Pei, K. Erixon, B. F. Luisi, F. J. Leeper
Date
:
16 Oct 09 (Deposition) - 09 Feb 10 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,E,F,V,X,Y,Z
Biol. Unit 1: V,X,Y,Z (1x)
Biol. Unit 2: A,B,E,F (1x)
Keywords
:
Thiamine Diphosphate, Lyase, Flavoprotein, Metal-Binding, Alcohol Fermentation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Y. Pei, K. Erixon, B. F. Luisi, F. J. Leeper
Structural Insights Into The Pre-Reaction State Of Pyruvate Decarboxylase From Zymomonas Mobilis
Biochemistry V. 49 1727 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: TPP_ENZYMES (A:423-442,B:423-442,E:423-442,F:42...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPP_ENZYMES
PS00187
Thiamine pyrophosphate enzymes signature.
PDC_ZYMMO
423-442
8
A:423-442
B:423-442
E:423-442
F:423-442
V:423-442
X:423-442
Y:423-442
Z:423-442
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2wvha2 (A:188-362)
1b: SCOP_d2wvhe2 (E:188-362)
1c: SCOP_d2wvhf2 (F:188-362)
1d: SCOP_d2wvhv2 (V:188-362)
1e: SCOP_d2wvhx2 (X:188-362)
1f: SCOP_d2wvhy2 (Y:188-362)
1g: SCOP_d2wvhz2 (Z:188-362)
1h: SCOP_d2wvhb2 (B:188-362)
2a: SCOP_d2wvha1 (A:1-187)
2b: SCOP_d2wvha3 (A:363-566)
2c: SCOP_d2wvhb1 (B:2-187)
2d: SCOP_d2wvhb3 (B:363-566)
2e: SCOP_d2wvhe1 (E:2-187)
2f: SCOP_d2wvhe3 (E:363-566)
2g: SCOP_d2wvhf1 (F:2-187)
2h: SCOP_d2wvhf3 (F:363-566)
2i: SCOP_d2wvhv1 (V:2-187)
2j: SCOP_d2wvhv3 (V:363-566)
2k: SCOP_d2wvhx1 (X:2-187)
2l: SCOP_d2wvhx3 (X:363-565)
2m: SCOP_d2wvhy1 (Y:2-187)
2n: SCOP_d2wvhy3 (Y:363-566)
2o: SCOP_d2wvhz1 (Z:2-187)
2p: SCOP_d2wvhz3 (Z:363-566)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Zymomonas mobilis [TaxId: 542]
(4)
1a
d2wvha2
A:188-362
1b
d2wvhe2
E:188-362
1c
d2wvhf2
F:188-362
1d
d2wvhv2
V:188-362
1e
d2wvhx2
X:188-362
1f
d2wvhy2
Y:188-362
1g
d2wvhz2
Z:188-362
1h
d2wvhb2
B:188-362
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
automated matches
(65)
Protein domain
:
automated matches
(65)
Zymomonas mobilis [TaxId: 542]
(4)
2a
d2wvha1
A:1-187
2b
d2wvha3
A:363-566
2c
d2wvhb1
B:2-187
2d
d2wvhb3
B:363-566
2e
d2wvhe1
E:2-187
2f
d2wvhe3
E:363-566
2g
d2wvhf1
F:2-187
2h
d2wvhf3
F:363-566
2i
d2wvhv1
V:2-187
2j
d2wvhv3
V:363-566
2k
d2wvhx1
X:2-187
2l
d2wvhx3
X:363-565
2m
d2wvhy1
Y:2-187
2n
d2wvhy3
Y:363-566
2o
d2wvhz1
Z:2-187
2p
d2wvhz3
Z:363-566
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CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2wvhA03 (A:355-548)
1b: CATH_2wvhB03 (B:355-548)
1c: CATH_2wvhE03 (E:355-548)
1d: CATH_2wvhF03 (F:355-548)
1e: CATH_2wvhV03 (V:355-548)
1f: CATH_2wvhX03 (X:355-548)
1g: CATH_2wvhY03 (Y:355-548)
1h: CATH_2wvhZ03 (Z:355-548)
1i: CATH_2wvhA01 (A:1-186)
1j: CATH_2wvhB01 (B:2-186)
1k: CATH_2wvhE01 (E:2-186)
1l: CATH_2wvhF01 (F:2-186)
1m: CATH_2wvhV01 (V:2-186)
1n: CATH_2wvhX01 (X:2-186)
1o: CATH_2wvhY01 (Y:2-186)
1p: CATH_2wvhZ01 (Z:2-186)
2a: CATH_2wvhA02 (A:188-350)
2b: CATH_2wvhB02 (B:188-350)
2c: CATH_2wvhE02 (E:188-350)
2d: CATH_2wvhF02 (F:188-350)
2e: CATH_2wvhV02 (V:188-350)
2f: CATH_2wvhX02 (X:188-350)
2g: CATH_2wvhY02 (Y:188-350)
2h: CATH_2wvhZ02 (Z:188-350)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Zymomonas mobilis. Organism_taxid: 542.
(4)
1a
2wvhA03
A:355-548
1b
2wvhB03
B:355-548
1c
2wvhE03
E:355-548
1d
2wvhF03
F:355-548
1e
2wvhV03
V:355-548
1f
2wvhX03
X:355-548
1g
2wvhY03
Y:355-548
1h
2wvhZ03
Z:355-548
1i
2wvhA01
A:1-186
1j
2wvhB01
B:2-186
1k
2wvhE01
E:2-186
1l
2wvhF01
F:2-186
1m
2wvhV01
V:2-186
1n
2wvhX01
X:2-186
1o
2wvhY01
Y:2-186
1p
2wvhZ01
Z:2-186
Homologous Superfamily
:
TPP-binding domain
(120)
Zymomonas mobilis. Organism_taxid: 542.
(4)
2a
2wvhA02
A:188-350
2b
2wvhB02
B:188-350
2c
2wvhE02
E:188-350
2d
2wvhF02
F:188-350
2e
2wvhV02
V:188-350
2f
2wvhX02
X:188-350
2g
2wvhY02
Y:188-350
2h
2wvhZ02
Z:188-350
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Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_TPP_enzyme_M_2wvhZ01 (Z:199-360)
1b: PFAM_TPP_enzyme_M_2wvhZ02 (Z:199-360)
1c: PFAM_TPP_enzyme_M_2wvhZ03 (Z:199-360)
1d: PFAM_TPP_enzyme_M_2wvhZ04 (Z:199-360)
1e: PFAM_TPP_enzyme_M_2wvhZ05 (Z:199-360)
1f: PFAM_TPP_enzyme_M_2wvhZ06 (Z:199-360)
1g: PFAM_TPP_enzyme_M_2wvhZ07 (Z:199-360)
1h: PFAM_TPP_enzyme_M_2wvhZ08 (Z:199-360)
2a: PFAM_TPP_enzyme_C_2wvhZ09 (Z:387-537)
2b: PFAM_TPP_enzyme_C_2wvhZ10 (Z:387-537)
2c: PFAM_TPP_enzyme_C_2wvhZ11 (Z:387-537)
2d: PFAM_TPP_enzyme_C_2wvhZ12 (Z:387-537)
2e: PFAM_TPP_enzyme_C_2wvhZ13 (Z:387-537)
2f: PFAM_TPP_enzyme_C_2wvhZ14 (Z:387-537)
2g: PFAM_TPP_enzyme_C_2wvhZ15 (Z:387-537)
2h: PFAM_TPP_enzyme_C_2wvhZ16 (Z:387-537)
3a: PFAM_TPP_enzyme_N_2wvhZ17 (Z:3-179)
3b: PFAM_TPP_enzyme_N_2wvhZ18 (Z:3-179)
3c: PFAM_TPP_enzyme_N_2wvhZ19 (Z:3-179)
3d: PFAM_TPP_enzyme_N_2wvhZ20 (Z:3-179)
3e: PFAM_TPP_enzyme_N_2wvhZ21 (Z:3-179)
3f: PFAM_TPP_enzyme_N_2wvhZ22 (Z:3-179)
3g: PFAM_TPP_enzyme_N_2wvhZ23 (Z:3-179)
3h: PFAM_TPP_enzyme_N_2wvhZ24 (Z:3-179)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
FAD_DHS
(82)
Family
:
TPP_enzyme_M
(50)
Zymomonas mobilis
(5)
1a
TPP_enzyme_M-2wvhZ01
Z:199-360
1b
TPP_enzyme_M-2wvhZ02
Z:199-360
1c
TPP_enzyme_M-2wvhZ03
Z:199-360
1d
TPP_enzyme_M-2wvhZ04
Z:199-360
1e
TPP_enzyme_M-2wvhZ05
Z:199-360
1f
TPP_enzyme_M-2wvhZ06
Z:199-360
1g
TPP_enzyme_M-2wvhZ07
Z:199-360
1h
TPP_enzyme_M-2wvhZ08
Z:199-360
Clan
:
THDP-binding
(106)
Family
:
TPP_enzyme_C
(54)
Zymomonas mobilis
(5)
2a
TPP_enzyme_C-2wvhZ09
Z:387-537
2b
TPP_enzyme_C-2wvhZ10
Z:387-537
2c
TPP_enzyme_C-2wvhZ11
Z:387-537
2d
TPP_enzyme_C-2wvhZ12
Z:387-537
2e
TPP_enzyme_C-2wvhZ13
Z:387-537
2f
TPP_enzyme_C-2wvhZ14
Z:387-537
2g
TPP_enzyme_C-2wvhZ15
Z:387-537
2h
TPP_enzyme_C-2wvhZ16
Z:387-537
Family
:
TPP_enzyme_N
(54)
Zymomonas mobilis
(5)
3a
TPP_enzyme_N-2wvhZ17
Z:3-179
3b
TPP_enzyme_N-2wvhZ18
Z:3-179
3c
TPP_enzyme_N-2wvhZ19
Z:3-179
3d
TPP_enzyme_N-2wvhZ20
Z:3-179
3e
TPP_enzyme_N-2wvhZ21
Z:3-179
3f
TPP_enzyme_N-2wvhZ22
Z:3-179
3g
TPP_enzyme_N-2wvhZ23
Z:3-179
3h
TPP_enzyme_N-2wvhZ24
Z:3-179
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