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2WVD
Biol. Unit 2
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Asym.Unit (187 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
STRUCTURAL AND MECHANISTIC INSIGHTS INTO HELICOBACTER PYLORI NIKR FUNCTION
Authors
:
C. Dian, C. Bahlawane, C. Muller, A. Round, C. Delay, C. Fauquant, K. Schauer, H. De Reuse, I. Michaud-Soret, L. Terradot
Date
:
16 Oct 09 (Deposition) - 19 Jan 10 (Release) - 26 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Transcription Factor, Transcription Regulation, Rhh Dna-Binding, Transcription, Metal-Binding, Metalloregulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Bahlawane, C. Dian, C. Muller, A. Round, C. Fauquant, K. Schauer, H. De Reuse, L. Terradot, I. Michaud-Soret
Structural And Mechanistic Insights Into Helicobacter Pylori Nikr Activation.
Nucleic Acids Res. V. 38 3106 2010
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
8: BC2 (SOFTWARE)
9: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:36 , ARG A:42
BINDING SITE FOR RESIDUE SO4 A1142
2
AC2
SOFTWARE
SER B:36 , SER B:38 , ARG B:42
BINDING SITE FOR RESIDUE SO4 B1144
3
AC3
SOFTWARE
ARG B:37 , HOH B:2014 , HOH B:2015 , HOH B:2016 , HOH B:2017 , ARG C:12
BINDING SITE FOR RESIDUE SO4 B1145
4
AC6
SOFTWARE
ARG A:12 , SER D:36 , ARG D:37 , HOH D:2004 , HOH D:2005
BINDING SITE FOR RESIDUE SO4 D1147
5
AC7
SOFTWARE
TYR A:72 , HIS A:74 , ASN A:80 , HIS A:99 , HIS A:101 , HOH A:2009
BINDING SITE FOR RESIDUE GOL A1143
6
AC8
SOFTWARE
THR A:97 , HIS A:99 , TYR D:72 , HIS D:99
BINDING SITE FOR RESIDUE GOL D1148
7
AC9
SOFTWARE
ARG B:42 , ARG B:46
BINDING SITE FOR RESIDUE GOL B1146
8
BC2
SOFTWARE
HIS A:74 , HIS A:75 , HIS A:101 , GLN D:87 , HIS D:93 , VAL D:94
BINDING SITE FOR RESIDUE GOL D1149
9
BC3
SOFTWARE
GLN A:87 , HIS A:88 , VAL A:94 , HIS D:75 , HIS D:101 , GLU D:104
BINDING SITE FOR RESIDUE GOL D1150
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2wvda1 (A:6-60)
1b: SCOP_d2wvdb1 (B:9-60)
1c: SCOP_d2wvdc1 (C:8-60)
1d: SCOP_d2wvdd1 (D:8-60)
2a: SCOP_d2wvda2 (A:61-141)
2b: SCOP_d2wvdb2 (B:61-143)
2c: SCOP_d2wvdc2 (C:61-145)
2d: SCOP_d2wvdd2 (D:61-145)
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Classes
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)
(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ribbon-helix-helix
(65)
Superfamily
:
Ribbon-helix-helix
(65)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Helicobacter pylori [TaxId: 85962]
(9)
1a
d2wvda1
A:6-60
1b
d2wvdb1
B:9-60
1c
d2wvdc1
C:8-60
1d
d2wvdd1
D:8-60
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
ACT-like
(63)
Family
:
automated matches
(16)
Protein domain
:
automated matches
(16)
Helicobacter pylori [TaxId: 85962]
(9)
2a
d2wvda2
A:61-141
2b
d2wvdb2
B:61-143
2c
d2wvdc2
C:61-145
2d
d2wvdd2
D:61-145
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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