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2WUR
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
ATOMIC RESOLUTION STRUCTURE OF GFP MEASURED ON A ROTATING ANODE
Authors
:
G. J. Palm, A. J. Schierbeek, M. Kloos
Date
:
07 Oct 09 (Deposition) - 12 May 10 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Chromophore, Beta-Barrel, Luminescence, Photoprotein, Bioluminescence, Fluorescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Shinobu, G. J. Palm, A. J. Schierbeek, N. Agmon
Visualizing Proton Antenna In A High-Resolution Green Fluorescent Protein Structure.
J. Am. Chem. Soc. V. 132 11093 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ETHANOL (EOHa)
1b: ETHANOL (EOHb)
1c: ETHANOL (EOHc)
1d: ETHANOL (EOHd)
1e: ETHANOL (EOHe)
1f: ETHANOL (EOHf)
1g: ETHANOL (EOHg)
2a: [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4... (GYSa)
3a: ISOPROPYL ALCOHOL (IPAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EOH
7
Ligand/Ion
ETHANOL
2
GYS
1
Mod. Amino Acid
[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
3
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:15 , TYR A:39 , ARG A:73 , GLU A:115 , THR A:225
BINDING SITE FOR RESIDUE IPA A 240
2
AC2
SOFTWARE
ASP A:117 , SER A:202 , GLN A:204 , PHE A:223 , HOH A:2171
BINDING SITE FOR RESIDUE EOH A 241
3
AC3
SOFTWARE
GLU A:17 , ASP A:19 , ILE A:123 , GLU A:124 , HOH A:2067 , HOH A:2318
BINDING SITE FOR RESIDUE EOH A 242
4
AC4
SOFTWARE
ARG A:109 , HOH A:2173
BINDING SITE FOR RESIDUE EOH A 243
5
AC5
SOFTWARE
LYS A:126 , SER A:175 , VAL A:176 , HOH A:2149 , HOH A:2253
BINDING SITE FOR RESIDUE EOH A 244
6
AC6
SOFTWARE
ASN A:159 , PRO A:192 , VAL A:193 , HOH A:2319
BINDING SITE FOR RESIDUE EOH A 245
7
AC7
SOFTWARE
ASN A:212 , GLU A:213 , LYS A:214 , HOH A:2320
BINDING SITE FOR RESIDUE EOH A 246
8
AC8
SOFTWARE
PRO A:54 , LEU A:137 , HIS A:139
BINDING SITE FOR RESIDUE EOH A 247
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GFP_AEQVI_001 (F100Y, chain A, )
2: VAR_GFP_AEQVI_002 (T108S, chain A, )
3: VAR_GFP_AEQVI_003 (L141M, chain A, )
4: VAR_GFP_AEQVI_004 (V219I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A
F
100
Y
2
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A
T
108
S
3
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A
L
141
M
4
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A
V
219
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wura_ (A:)
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Classes
(
)
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)
Folds
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
automated matches
(102)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(34)
1a
d2wura_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_GFP_2wurA01 (A:5-229)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GFP
(101)
Family
:
GFP
(101)
Aequorea victoria (Jellyfish)
(53)
1a
GFP-2wurA01
A:5-229
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (140 KB)
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