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2WUL
Asym. Unit
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Asym.Unit (81 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN GLUTAREDOXIN 5 WITH BOUND GLUTATHIONE IN AN FES CLUSTER
Authors
:
A. K. Roos, C. Johansson, K. Guo, W. W. Yue, A. C. W. Pike, C. D. O. Cooper, E K. L. Kavanagh, A. Chaikuad, F. Von Delft, C. H. Arrowsmith, J. Weigel A. Edwards, C. Bountra, U. Oppermann
Date
:
06 Oct 09 (Deposition) - 20 Oct 09 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Chromosome 14 Open Reading Frame 87, Oxidoreductase, Thioredoxin Family, Glrx5, Pr01238, Flb4739
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Johansson, A. K. Roos, S. J. Montano, R. Sengupta, P. Filippakopoulos, K. Guo, F. Von Delft, A. Holmgren, U. Oppermann, K. L. Kavanagh
The Crystal Structure Of Human Glrx5: Iron Sulphur Cluster Coordination, Tetrameric Assembly And Monomer Activity.
Biochem. J. V. 433 303 2011
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3a: GLUTATHIONE (GSHa)
3b: GLUTATHIONE (GSHb)
3c: GLUTATHIONE (GSHc)
3d: GLUTATHIONE (GSHd)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
GSH
4
Ligand/Ion
GLUTATHIONE
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:59 , PHE A:69 , ARG A:97 , LYS A:101 , THR A:108 , ILE A:109 , GLY A:121 , CYS A:122 , ASP A:123 , FES A:1150 , HOH A:2008 , HOH A:2010 , HOH A:2013 , HOH D:2030 , HOH D:2032
BINDING SITE FOR RESIDUE GSH A 300
02
AC2
SOFTWARE
CYS A:67 , PHE A:69 , GSH A:300 , LYS B:59 , CYS B:67 , PHE B:69 , GSH B:300
BINDING SITE FOR RESIDUE FES A1150
03
AC3
SOFTWARE
FES A:1150 , LYS B:59 , PHE B:69 , ARG B:97 , LYS B:101 , THR B:108 , ILE B:109 , GLY B:121 , CYS B:122 , ASP B:123 , HOH B:2019 , HOH B:2022 , HOH B:2027 , HOH B:2028 , HOH B:2029
BINDING SITE FOR RESIDUE GSH B 300
04
AC4
SOFTWARE
ARG A:97 , PRO B:65 , CYS B:67
BINDING SITE FOR RESIDUE CL B1150
05
AC5
SOFTWARE
VAL C:119
BINDING SITE FOR RESIDUE PEG B1151
06
AC6
SOFTWARE
HOH B:2028 , LYS C:59 , PHE C:69 , ARG C:97 , LYS C:101 , THR C:108 , ILE C:109 , PRO C:110 , GLY C:121 , CYS C:122 , ASP C:123 , FES C:1149 , HOH C:2015 , HOH C:2016 , HOH C:2017
BINDING SITE FOR RESIDUE GSH C 300
07
AC7
SOFTWARE
CYS C:67 , GSH C:300 , LYS D:59 , CYS D:67 , PHE D:69 , GSH D:300
BINDING SITE FOR RESIDUE FES C1149
08
AC8
SOFTWARE
HOH A:2013 , FES C:1149 , LYS D:59 , PHE D:69 , ARG D:97 , LYS D:101 , THR D:108 , ILE D:109 , GLY D:121 , CYS D:122 , ASP D:123 , HOH D:2023 , HOH D:2029 , HOH D:2030 , HOH D:2031 , HOH D:2032 , HOH D:2033
BINDING SITE FOR RESIDUE GSH D 300
09
AC9
SOFTWARE
ARG C:97 , CYS D:67
BINDING SITE FOR RESIDUE CL D1150
10
BC1
SOFTWARE
LYS D:53 , ASP D:84
BINDING SITE FOR RESIDUE CL D1151
11
BC2
SOFTWARE
GLU B:117 , LYS D:50
BINDING SITE FOR RESIDUE CL D1152
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_026125 (A146T, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_026125
A
146
T
GLRX5_HUMAN
Polymorphism
11628901
A/B/C/D
A
146
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_2 (A:42-145,B:42-145,C:42-145,D:42-14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_2
PS51354
Glutaredoxin domain profile.
GLRX5_HUMAN
42-145
4
A:42-145
B:42-145
C:42-145
D:42-145
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glutaredoxin_2wulD01 (D:54-119)
1b: PFAM_Glutaredoxin_2wulD02 (D:54-119)
1c: PFAM_Glutaredoxin_2wulD03 (D:54-119)
1d: PFAM_Glutaredoxin_2wulD04 (D:54-119)
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Clan
:
Thioredoxin
(367)
Family
:
Glutaredoxin
(22)
Homo sapiens (Human)
(2)
1a
Glutaredoxin-2wulD01
D:54-119
1b
Glutaredoxin-2wulD02
D:54-119
1c
Glutaredoxin-2wulD03
D:54-119
1d
Glutaredoxin-2wulD04
D:54-119
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Asymmetric Unit 1
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