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2WU9
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEROXISOMAL KAT2 FROM ARABIDOPSIS THALIANA
Authors
:
V. E. Pye, C. E. Christensen, J. H. Dyer, S. Arent, A. Henriksen
Date
:
01 Oct 09 (Deposition) - 12 May 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cysteine Oxidation, Fatty Acid Metabolism, Oxylipin Biosynthesis, Plant Lipid Metabolism, Fatty Acid Biosynthesis, Acyltransferase, Lipid Metabolism, Transferase, Beta Oxidation, Lipid Synthesis
(Keyword Search:
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Reference
:
V. E. Pye, C. E. Christensen, J. H. Dyer, S. Arent, A. Henriksen
Peroxisomal Plant 3-Ketoacyl-Coa Thiolases Structure And Activity Are Regulated By A Sensitive Redox Switch
J. Biol. Chem. V. 285 24078 2010
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Hetero Components
(1, 9)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:50 , HOH A:2595 , HOH A:2596
BINDING SITE FOR RESIDUE EDO A1449
2
AC2
SOFTWARE
PRO A:75 , ALA A:107 , PRO A:108 , GLN A:111 , ARG A:112 , GLU A:115 , THR A:170 , ASN A:171 , HOH A:2597
BINDING SITE FOR RESIDUE EDO A1450
3
AC3
SOFTWARE
GLY A:155 , ASP A:158 , HOH A:2255 , HOH A:2454
BINDING SITE FOR RESIDUE EDO A1451
4
AC4
SOFTWARE
ALA A:217 , SER A:221 , LYS A:224 , GLU A:362 , PHE A:368 , HOH A:2527 , HOH A:2599
BINDING SITE FOR RESIDUE EDO A1452
5
AC5
SOFTWARE
CYS A:192 , LEU A:194 , MET A:196 , THR A:199 , PRO A:330 , MET A:333 , THR A:428 , HOH A:2600
BINDING SITE FOR RESIDUE EDO A1453
6
AC6
SOFTWARE
GLN A:216 , VAL A:219 , LEU A:270 , HOH A:2358 , HOH A:2601 , HOH B:2531
BINDING SITE FOR RESIDUE EDO A1454
7
AC7
SOFTWARE
ALA B:217 , ASP B:220 , SER B:221 , LYS B:224 , GLU B:362 , PHE B:368 , HOH B:2297 , HOH B:2532
BINDING SITE FOR RESIDUE EDO B1449
8
AC8
SOFTWARE
LEU B:47 , ARG B:306 , VAL B:316 , VAL B:319 , ARG B:321 , GLY B:439 , ASP B:440 , GLU B:444
BINDING SITE FOR RESIDUE EDO B1450
9
AC9
SOFTWARE
PHE A:156 , THR B:322 , PHE B:323 , ALA B:347 , HOH B:2424 , HOH B:2533
BINDING SITE FOR RESIDUE EDO B1451
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:134-152,B:134-152)
2: THIOLASE_2 (A:383-399,B:383-399)
3: THIOLASE_3 (A:420-433,B:420-433)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIK2_ARATH
134-152
2
A:134-152
B:134-152
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIK2_ARATH
383-399
2
A:383-399
B:383-399
3
THIOLASE_3
PS00099
Thiolases active site.
THIK2_ARATH
420-433
2
A:420-433
B:420-433
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wu9a1 (A:46-311)
1b: SCOP_d2wu9a2 (A:312-448)
1c: SCOP_d2wu9b1 (B:47-311)
1d: SCOP_d2wu9b2 (B:312-448)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(3)
1a
d2wu9a1
A:46-311
1b
d2wu9a2
A:312-448
1c
d2wu9b1
B:47-311
1d
d2wu9b2
B:312-448
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Thiolase_C_2wu9B01 (B:314-438)
1b: PFAM_Thiolase_C_2wu9B02 (B:314-438)
2a: PFAM_Thiolase_N_2wu9B03 (B:49-307)
2b: PFAM_Thiolase_N_2wu9B04 (B:49-307)
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Clan
:
Thiolase
(72)
Family
:
Thiolase_C
(23)
Arabidopsis thaliana (Mouse-ear cress)
(1)
1a
Thiolase_C-2wu9B01
B:314-438
1b
Thiolase_C-2wu9B02
B:314-438
Family
:
Thiolase_N
(23)
Arabidopsis thaliana (Mouse-ear cress)
(1)
2a
Thiolase_N-2wu9B03
B:49-307
2b
Thiolase_N-2wu9B04
B:49-307
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Asymmetric Unit 1
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Asym.Unit (152 KB)
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