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2WTZ
Biol. Unit 1
Info
Asym.Unit (290 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
MURE LIGASE OF MYCOBACTERIUM TUBERCULOSIS
Authors
:
C. Basavannacharya, G. Robertson, T. Munshi, N. H. Keep, S. Bhakta
Date
:
25 Sep 09 (Deposition) - 15 Dec 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Nucleotide-Binding, Peptidoglycan Synthesis, Mure, Ligase, Cell Shape, Cell Cycle, Mycobacterium Tuberculosis, Cell Wall Biogenesis/Degradation, Atp-Binding, Peptidoglycan, Cell Division
(Keyword Search:
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Reference
:
C. Basavannacharya, G. Robertson, T. Munshi, N. H. Keep, S. Bhakta
Atp-Dependent Mure Ligase In Mycobacterium Tuberculosis: Biochemical And Structural Characterisation.
Tuberculosis(Edinb. ) V. 90 16 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
1b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
1c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
1d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGa)
3b: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGb)
3c: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGc)
3d: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
UAG
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:67 , ARG A:68 , ALA A:69 , GLN A:70 , PHE A:78 , LEU A:81 , GLY A:83 , SER A:84 , THR A:85 , THR A:86 , GLY A:88 , HIS A:91 , LEU A:194 , THR A:195 , THR A:196 , GLU A:198 , SER A:222 , HIS A:224 , LEU A:228 , ARG A:230 , HIS A:248 , MG A:1499
BINDING SITE FOR RESIDUE UAG A1498
2
AC2
SOFTWARE
ASP A:247 , HIS A:248 , UAG A:1498
BINDING SITE FOR RESIDUE MG A1499
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2wtzA02 (A:142-375)
1b: CATH_2wtzB02 (B:142-375)
1c: CATH_2wtzD02 (D:142-375)
1d: CATH_2wtzC02 (C:142-377)
2a: CATH_2wtzA03 (A:376-533)
2b: CATH_2wtzB03 (B:376-533)
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(
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(
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(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
1a
2wtzA02
A:142-375
1b
2wtzB02
B:142-375
1c
2wtzD02
D:142-375
1d
2wtzC02
C:142-377
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
[code=3.90.190.20, no name defined]
(34)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
2a
2wtzA03
A:376-533
2b
2wtzB03
B:376-533
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Mur_ligase_2wtzD01 (D:61-139)
1b: PFAM_Mur_ligase_2wtzD02 (D:61-139)
1c: PFAM_Mur_ligase_2wtzD03 (D:61-139)
1d: PFAM_Mur_ligase_2wtzD04 (D:61-139)
2a: PFAM_Mur_ligase_C_2wtzD05 (D:374-457)
2b: PFAM_Mur_ligase_C_2wtzD06 (D:374-457)
2c: PFAM_Mur_ligase_C_2wtzD07 (D:374-457)
2d: PFAM_Mur_ligase_C_2wtzD08 (D:374-457)
3a: PFAM_Mur_ligase_M_2wtzD09 (D:151-355)
3b: PFAM_Mur_ligase_M_2wtzD10 (D:151-355)
3c: PFAM_Mur_ligase_M_2wtzD11 (D:151-355)
3d: PFAM_Mur_ligase_M_2wtzD12 (D:151-355)
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Clans
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)
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Mur_ligase
(4)
Mycobacterium tuberculosis
(2)
1a
Mur_ligase-2wtzD01
D:61-139
1b
Mur_ligase-2wtzD02
D:61-139
1c
Mur_ligase-2wtzD03
D:61-139
1d
Mur_ligase-2wtzD04
D:61-139
Clan
:
no clan defined [family: Mur_ligase_C]
(24)
Family
:
Mur_ligase_C
(24)
Mycobacterium tuberculosis
(2)
2a
Mur_ligase_C-2wtzD05
D:374-457
2b
Mur_ligase_C-2wtzD06
D:374-457
2c
Mur_ligase_C-2wtzD07
D:374-457
2d
Mur_ligase_C-2wtzD08
D:374-457
Clan
:
no clan defined [family: Mur_ligase_M]
(23)
Family
:
Mur_ligase_M
(23)
Mycobacterium tuberculosis
(2)
3a
Mur_ligase_M-2wtzD09
D:151-355
3b
Mur_ligase_M-2wtzD10
D:151-355
3c
Mur_ligase_M-2wtzD11
D:151-355
3d
Mur_ligase_M-2wtzD12
D:151-355
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (290 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
Biol.Unit 3 (67 KB)
Header - Biol.Unit 3
Biol.Unit 4 (72 KB)
Header - Biol.Unit 4
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